Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.09003 * 112.84781 * 45.33401 * 3 2 1 5 5 C 1.53776 * 113.61627 * 274.13847 * 3 2 1 6 6 C 1.53778 * 87.08270 * 220.01997 * 5 3 2 7 7 C 1.53780 * 113.61579 * 176.52859 * 3 2 1 8 8 H 1.08997 * 113.61397 * 254.53379 * 7 3 2 9 9 N 1.46898 * 113.60928 * 25.43344 * 7 3 2 10 10 C 1.46901 * 110.99825 * 204.99825 * 9 7 3 11 11 C 1.53003 * 109.47559 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47177 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00121 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99537 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00191 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99540 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47266 * 89.99984 * 16 14 12 18 18 H 1.48508 * 109.46912 * 209.99967 * 16 14 12 19 19 H 1.48500 * 109.47435 * 329.99928 * 16 14 12 20 20 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 21 21 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 23 23 H 1.09006 * 113.61592 * 334.56726 * 5 3 2 24 24 H 1.09002 * 113.61828 * 105.38009 * 5 3 2 25 25 H 1.08997 * 113.61930 * 139.98219 * 6 5 3 26 26 H 1.09001 * 113.60888 * 270.88064 * 6 5 3 27 27 H 1.00898 * 111.00795 * 328.95363 * 9 7 3 28 28 H 1.09006 * 109.47149 * 300.00317 * 10 9 7 29 29 H 1.08998 * 109.47149 * 60.00214 * 10 9 7 30 30 H 1.08996 * 109.47092 * 300.00294 * 11 10 9 31 31 H 1.09002 * 109.46592 * 60.00335 * 11 10 9 32 32 H 0.96999 * 120.00157 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6293 2.3387 0.7144 5 6 2.2617 2.3906 -1.4053 6 6 3.4950 3.1797 -0.9351 7 6 3.7311 2.0513 0.0853 8 1 4.0539 2.4068 1.0639 9 7 4.5655 0.9575 -0.4296 10 6 5.9018 0.9830 0.1801 11 6 6.7401 -0.1679 -0.3800 12 6 8.1111 -0.1413 0.2450 13 1 8.3596 0.6200 0.9695 14 6 9.0483 -1.0890 -0.1083 15 7 8.7458 -2.0158 -0.9910 16 14 10.7475 -1.0565 0.6669 17 1 10.7438 -1.8806 1.9022 18 1 11.7396 -1.6060 -0.2918 19 1 11.1099 0.3429 1.0066 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 2.4784 1.6719 -2.1957 24 1 1.3991 3.0184 -1.6291 25 1 4.2773 3.2577 -1.6900 26 1 3.2513 4.1378 -0.4760 27 1 4.1196 0.0639 -0.2859 28 1 6.3879 1.9313 -0.0494 29 1 5.8103 0.8738 1.2607 30 1 6.2542 -1.1163 -0.1509 31 1 6.8316 -0.0583 -1.4606 32 1 9.4049 -2.6827 -1.2392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591837202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = 10.142891 kcal Electronic energy + Delta-G solvation = -12326.143999 eV Core-core repulsion = 10220.160538 eV Total energy + Delta-G solvation = -2105.983461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.90255 -34.47248 -32.40020 -29.14695 -28.63481 -25.74540 -24.78437 -23.35193 -20.54100 -19.05579 -16.70965 -16.10282 -15.76892 -14.98635 -14.49493 -14.35339 -13.70556 -13.28714 -13.13026 -12.94828 -12.44833 -12.10330 -12.04456 -11.15828 -11.01886 -10.92230 -10.70415 -10.56949 -10.28527 -9.91111 -9.72073 -9.27887 -9.10198 -8.31044 -7.81685 -7.59196 -5.95053 -3.97657 1.70184 2.60131 3.35309 3.41177 3.44629 4.34555 4.50546 4.61038 4.76410 4.95931 5.04615 5.08408 5.23457 5.40741 5.49871 5.59735 5.74867 5.82386 6.17257 6.19111 6.34167 6.42072 6.50584 7.02389 7.51785 7.78093 7.86891 8.00647 8.13063 8.47982 9.09515 9.65739 11.16445 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048387 B = 0.005901 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.524895 B = 4743.922964 C = 5076.682171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.243 6.243 3 C -0.095 4.095 4 H 0.101 0.899 5 C -0.115 4.115 6 C -0.132 4.132 7 C 0.092 3.908 8 H 0.060 0.940 9 N -0.667 5.667 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.071 0.929 21 H 0.098 0.902 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.345 0.655 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.026 0.974 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 7.819 1.463 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.015 6.015 3 C -0.224 4.224 4 H 0.119 0.881 5 C -0.155 4.155 6 C -0.172 4.172 7 C -0.021 4.021 8 H 0.078 0.922 9 N -0.302 5.302 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.090 0.910 21 H 0.116 0.884 22 H 0.093 0.907 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.168 0.832 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.620 7.083 0.836 16.267 hybrid contribution -0.174 0.631 1.400 1.545 sum -14.794 7.715 2.236 16.833 Atomic orbital electron populations 1.23366 0.95457 1.06131 1.04416 1.86996 1.06084 1.10814 1.97646 1.25191 1.01351 0.93969 1.01917 0.88052 1.23085 0.98038 0.99264 0.95122 1.22994 0.98410 0.96182 0.99653 1.22494 0.88412 0.94339 0.96807 0.92179 1.60602 1.03593 1.05469 1.60538 1.22247 0.87163 1.01722 0.95088 1.19067 0.93234 0.91793 0.97130 1.21167 0.97480 1.13060 1.24273 0.92766 1.25001 0.98685 0.95501 0.95157 1.69977 1.34842 1.16102 1.32274 0.86587 0.84143 0.78194 0.79018 1.20718 1.21204 1.19901 0.91021 0.88364 0.90682 0.88310 0.92016 0.89789 0.90467 0.83240 0.92210 0.96516 0.96735 0.95584 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.76 101.05 1.09 -0.12 16 2 S -0.24 -3.39 19.99 -107.50 -2.15 -5.54 16 3 C -0.09 -1.21 4.24 -25.92 -0.11 -1.32 16 4 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 5 C -0.12 -1.39 7.59 -25.92 -0.20 -1.59 16 6 C -0.13 -1.70 7.89 -25.83 -0.20 -1.91 16 7 C 0.09 1.40 4.15 -66.81 -0.28 1.12 16 8 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 9 N -0.67 -12.72 6.41 -105.77 -0.68 -13.40 16 10 C 0.07 1.45 5.47 -3.82 -0.02 1.43 16 11 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 21 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 22 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 23 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.34 6.77 6.26 -35.23 -0.22 6.55 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -30.61 278.26 -8.44 -39.05 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.24 Total: 1.13 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.28 Total: -15.70 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.06 Total: -40.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.15 Total: -5.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.61 -8.44 -39.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591837202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.194 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds