Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.09003 * 112.84781 * 45.33401 * 3 2 1 5 5 C 1.53776 * 113.61627 * 274.13847 * 3 2 1 6 6 C 1.53778 * 87.08270 * 220.01997 * 5 3 2 7 7 C 1.53780 * 113.61579 * 176.52859 * 3 2 1 8 8 H 1.08997 * 113.61397 * 254.53379 * 7 3 2 9 9 N 1.46898 * 113.60928 * 25.43344 * 7 3 2 10 10 C 1.46901 * 110.99825 * 204.99825 * 9 7 3 11 11 C 1.53003 * 109.47559 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47177 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00121 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99537 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00191 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99540 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47266 * 89.99984 * 16 14 12 18 18 H 1.48508 * 109.46912 * 209.99967 * 16 14 12 19 19 H 1.48500 * 109.47435 * 329.99928 * 16 14 12 20 20 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 21 21 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 23 23 H 1.09006 * 113.61592 * 334.56726 * 5 3 2 24 24 H 1.09002 * 113.61828 * 105.38009 * 5 3 2 25 25 H 1.08997 * 113.61930 * 139.98219 * 6 5 3 26 26 H 1.09001 * 113.60888 * 270.88064 * 6 5 3 27 27 H 1.00898 * 111.00795 * 328.95363 * 9 7 3 28 28 H 1.09006 * 109.47149 * 300.00317 * 10 9 7 29 29 H 1.08998 * 109.47149 * 60.00214 * 10 9 7 30 30 H 1.08996 * 109.47092 * 300.00294 * 11 10 9 31 31 H 1.09002 * 109.46592 * 60.00335 * 11 10 9 32 32 H 0.96999 * 120.00157 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6293 2.3387 0.7144 5 6 2.2617 2.3906 -1.4053 6 6 3.4950 3.1797 -0.9351 7 6 3.7311 2.0513 0.0853 8 1 4.0539 2.4068 1.0639 9 7 4.5655 0.9575 -0.4296 10 6 5.9018 0.9830 0.1801 11 6 6.7401 -0.1679 -0.3800 12 6 8.1111 -0.1413 0.2450 13 1 8.3596 0.6200 0.9695 14 6 9.0483 -1.0890 -0.1083 15 7 8.7458 -2.0158 -0.9910 16 14 10.7475 -1.0565 0.6669 17 1 10.7438 -1.8806 1.9022 18 1 11.7396 -1.6060 -0.2918 19 1 11.1099 0.3429 1.0066 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 2.4784 1.6719 -2.1957 24 1 1.3991 3.0184 -1.6291 25 1 4.2773 3.2577 -1.6900 26 1 3.2513 4.1378 -0.4760 27 1 4.1196 0.0639 -0.2859 28 1 6.3879 1.9313 -0.0494 29 1 5.8103 0.8738 1.2607 30 1 6.2542 -1.1163 -0.1509 31 1 6.8316 -0.0583 -1.4606 32 1 9.4049 -2.6827 -1.2392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591837202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = -9.511345 kcal Electronic energy + Delta-G solvation = -12326.996270 eV Core-core repulsion = 10220.160538 eV Total energy + Delta-G solvation = -2106.835733 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05866 -36.29763 -34.41644 -30.81077 -29.70295 -26.82854 -26.45209 -24.86243 -22.51003 -20.19661 -18.52007 -17.67616 -16.98876 -16.47417 -16.37055 -15.53917 -14.77652 -14.72798 -14.44584 -14.01126 -13.99002 -13.66582 -13.23439 -12.96079 -12.85196 -12.48432 -12.25867 -11.99522 -11.63687 -11.60061 -11.34942 -11.07373 -10.67125 -10.57357 -9.32520 -8.67406 -8.20359 -6.32811 0.74620 1.40307 1.42644 1.53839 1.67952 2.40640 3.12758 3.17143 3.49127 3.66825 3.91173 4.11976 4.35864 4.37593 4.43272 4.49444 4.59148 4.69320 4.87797 4.90385 5.02888 5.14212 5.17857 5.36176 5.46474 5.64019 5.77719 6.11793 6.27025 6.46742 6.83963 7.36599 8.92179 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048387 B = 0.005901 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.524895 B = 4743.922964 C = 5076.682171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.325 6.325 3 C -0.073 4.073 4 H 0.129 0.871 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.071 3.929 8 H 0.062 0.938 9 N -0.675 5.675 10 C 0.085 3.915 11 C 0.033 3.967 12 C -0.545 4.545 13 H 0.062 0.938 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.971 3.029 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.261 1.261 20 H 0.088 0.912 21 H 0.106 0.894 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.340 0.660 28 H 0.063 0.937 29 H 0.017 0.983 30 H -0.015 1.015 31 H -0.006 1.006 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.357 9.420 2.403 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.097 6.097 3 C -0.202 4.202 4 H 0.147 0.853 5 C -0.147 4.147 6 C -0.164 4.164 7 C -0.041 4.041 8 H 0.080 0.920 9 N -0.309 5.309 10 C -0.044 4.044 11 C -0.005 4.005 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.795 3.205 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.186 1.186 20 H 0.107 0.893 21 H 0.124 0.876 22 H 0.107 0.893 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.127 0.873 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.004 0.996 31 H 0.013 0.987 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.447 8.706 1.777 17.821 hybrid contribution -0.015 0.115 1.085 1.091 sum -15.462 8.821 2.862 18.030 Atomic orbital electron populations 1.23386 0.90699 1.07185 1.05896 1.87323 1.11343 1.13235 1.97849 1.25154 0.99366 0.92729 1.02959 0.85322 1.22995 0.98820 0.98825 0.94070 1.23020 0.98154 0.96772 0.98441 1.22705 0.89798 0.94002 0.97574 0.92037 1.60519 1.02983 1.06644 1.60799 1.21848 0.88377 0.99422 0.94711 1.18904 0.93792 0.92505 0.95265 1.21593 0.98519 1.13559 1.24710 0.91986 1.26023 1.03479 0.94812 0.95499 1.70123 1.36594 1.16891 1.33656 0.85366 0.78160 0.78877 0.78130 1.19711 1.20597 1.18551 0.89315 0.87571 0.89310 0.90553 0.88848 0.91602 0.87302 0.83796 0.91877 0.96520 0.99632 0.98721 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 10.76 113.37 1.22 -0.52 16 2 S -0.32 -8.89 19.99 -56.49 -1.13 -10.02 16 3 C -0.07 -1.72 4.24 31.12 0.13 -1.59 16 4 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 5 C -0.11 -2.35 7.59 31.12 0.24 -2.11 16 6 C -0.12 -2.94 7.89 31.18 0.25 -2.69 16 7 C 0.07 2.09 4.15 45.50 0.19 2.28 16 8 H 0.06 1.79 7.87 -2.39 -0.02 1.77 16 9 N -0.68 -26.32 6.41 -488.55 -3.13 -29.46 16 10 C 0.09 3.85 5.47 86.30 0.47 4.32 16 11 C 0.03 1.86 5.23 29.85 0.16 2.01 16 12 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 13 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 15 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 16 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 2.04 8.10 -2.38 -0.02 2.02 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.34 13.90 6.26 -92.28 -0.58 13.32 16 28 H 0.06 2.77 8.14 -2.38 -0.02 2.76 16 29 H 0.02 0.74 8.13 -2.39 -0.02 0.72 16 30 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -67.79 278.26 1.89 -65.90 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.50 Total: 14.67 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.35 Total: -29.93 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.85 Total: -87.91 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.13 Total: -10.02 kcal Total: -67.79 1.89 -65.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591837202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.388 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds