Wall clock time and date at job start Mon Mar 30 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99683 * 2 1 4 4 C 1.53000 * 109.46734 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.51390 * 59.89603 * 4 3 2 6 6 C 1.53293 * 109.51233 * 180.02562 * 4 3 2 7 7 N 1.47151 * 108.38719 * 172.27716 * 6 4 3 8 8 C 1.36941 * 120.98397 * 129.48341 * 7 6 4 9 9 H 1.07997 * 119.99583 * 333.82153 * 8 7 6 10 10 C 1.38810 * 119.99804 * 153.82245 * 8 7 6 11 11 N 1.31616 * 119.99523 * 158.68289 * 10 8 7 12 12 Si 1.86798 * 120.00084 * 338.67476 * 10 8 7 13 13 H 1.48500 * 109.46909 * 91.86804 * 12 10 8 14 14 H 1.48501 * 109.47217 * 211.86513 * 12 10 8 15 15 H 1.48499 * 109.47362 * 331.86919 * 12 10 8 16 16 C 1.47148 * 118.03145 * 309.46333 * 7 6 4 17 17 C 1.53292 * 108.41959 * 50.51819 * 16 7 6 18 18 O 1.42962 * 109.55122 * 299.77121 * 4 3 2 19 19 H 1.08999 * 109.46845 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47022 * 300.00287 * 1 2 3 21 21 H 1.08999 * 109.47127 * 59.99828 * 1 2 3 22 22 H 1.08994 * 109.46813 * 59.99981 * 3 2 1 23 23 H 1.08997 * 109.46518 * 299.99748 * 3 2 1 24 24 H 1.09004 * 109.47249 * 180.10073 * 5 4 3 25 25 H 1.09000 * 109.47504 * 300.10120 * 5 4 3 26 26 H 1.09000 * 109.47220 * 60.10227 * 5 4 3 27 27 H 1.08995 * 109.68403 * 52.54324 * 6 4 3 28 28 H 1.09003 * 109.67613 * 291.99631 * 6 4 3 29 29 H 0.97004 * 119.99747 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.68150 * 170.26065 * 16 7 6 31 31 H 1.08998 * 109.68270 * 290.77142 * 16 7 6 32 32 H 1.08998 * 109.51370 * 67.64004 * 17 16 7 33 33 H 1.09000 * 109.51158 * 187.79140 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9873 0.4235 -1.2485 6 6 4.1600 2.5846 0.0000 7 7 5.6128 2.4447 0.1870 8 6 6.4952 3.0706 -0.6526 9 1 6.2011 3.3101 -1.6637 10 6 7.7676 3.3972 -0.2039 11 7 8.7386 3.5996 -1.0690 12 14 8.1016 3.5494 1.6277 13 1 8.5638 2.2412 2.1570 14 1 9.1515 4.5745 1.8559 15 1 6.8551 3.9535 2.3263 16 6 6.0894 1.6126 1.3032 17 6 5.3711 0.2599 1.2400 18 8 3.9600 0.4799 1.1684 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.6886 1.8464 0.8899 23 1 1.6886 1.8463 -0.8900 24 1 5.0739 0.3363 -1.2474 25 1 3.5429 -0.5718 -1.2479 26 1 3.6672 0.9638 -2.1395 27 1 3.7399 3.1737 0.8152 28 1 3.9581 3.0770 -0.9513 29 1 9.6276 3.8282 -0.7555 30 1 7.1653 1.4614 1.2150 31 1 5.8643 2.1041 2.2497 32 1 5.6996 -0.2859 0.3556 33 1 5.6051 -0.3186 2.1337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599691315.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:02 Heat of formation + Delta-G solvation = -81.124699 kcal Electronic energy + Delta-G solvation = -15597.223867 eV Core-core repulsion = 13044.529875 eV Total energy + Delta-G solvation = -2552.693992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83664 -38.48534 -36.41927 -34.11365 -33.49026 -29.98720 -28.32781 -28.00702 -26.30303 -24.79183 -23.23634 -20.50234 -18.95758 -17.74020 -17.45467 -17.12981 -16.57837 -16.18018 -15.87585 -15.53797 -15.34591 -14.96307 -14.27228 -13.86974 -13.73880 -13.29752 -13.08091 -12.90688 -12.59793 -12.46577 -12.13110 -12.07893 -12.00163 -11.55294 -11.23958 -11.02373 -10.56488 -10.45006 -8.95844 -8.19650 -5.51819 1.27500 1.39811 1.48699 2.38610 2.70078 2.79420 3.06687 3.28232 3.93574 4.02706 4.07042 4.23172 4.31719 4.42988 4.48059 4.54619 4.61856 4.64810 4.66998 4.74826 4.83592 4.90026 5.00243 5.02740 5.07945 5.37940 5.77711 6.07948 6.22803 6.36319 6.80979 7.53909 7.95408 8.99590 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055125 B = 0.008976 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.811515 B = 3118.821218 C = 3282.669606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.084 3.916 4 C 0.100 3.900 5 C -0.153 4.153 6 C 0.126 3.874 7 N -0.617 5.617 8 C -0.247 4.247 9 H 0.059 0.941 10 C -0.031 4.031 11 N -0.952 5.952 12 Si 0.943 3.057 13 H -0.271 1.271 14 H -0.308 1.308 15 H -0.268 1.268 16 C 0.085 3.915 17 C 0.052 3.948 18 O -0.379 6.379 19 H 0.096 0.904 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.263 0.737 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.461 -6.394 3.938 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.007 3.993 4 C 0.059 3.941 5 C -0.211 4.211 6 C 0.000 4.000 7 N -0.342 5.342 8 C -0.376 4.376 9 H 0.077 0.923 10 C -0.226 4.226 11 N -0.598 5.598 12 Si 0.771 3.229 13 H -0.198 1.198 14 H -0.237 1.237 15 H -0.192 1.192 16 C -0.040 4.040 17 C -0.026 4.026 18 O -0.298 6.298 19 H 0.114 0.886 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.338 -6.572 4.042 16.282 hybrid contribution 0.799 0.726 0.413 1.156 sum -13.539 -5.846 4.455 15.405 Atomic orbital electron populations 1.22938 0.79594 1.03749 1.00852 1.87914 1.21264 1.27640 1.95551 1.22422 0.89723 0.85302 1.01815 1.22075 0.93454 0.92354 0.86204 1.22067 1.01130 1.00731 0.97162 1.21652 0.83130 0.94482 1.00722 1.44388 1.01754 1.54884 1.33224 1.18827 0.93614 1.32466 0.92727 0.92327 1.25811 0.95916 0.99761 1.01120 1.69958 1.01539 1.52824 1.35454 0.85989 0.76985 0.77165 0.82716 1.19769 1.23716 1.19245 1.22091 0.98611 0.92659 0.90665 1.23036 0.81201 0.95815 1.02573 1.87896 1.22492 1.76846 1.42565 0.88598 0.93389 0.92858 0.92094 0.89923 0.93621 0.91622 0.91435 0.94315 0.90659 0.92831 0.91760 0.94646 0.93023 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.40 -11.25 9.92 -140.12 -1.39 -12.64 16 3 C 0.08 2.31 5.07 71.98 0.36 2.67 16 4 C 0.10 3.44 0.89 -10.70 -0.01 3.43 16 5 C -0.15 -5.30 7.95 71.98 0.57 -4.73 16 6 C 0.13 4.91 5.40 86.35 0.47 5.38 16 7 N -0.62 -29.39 2.35 -697.57 -1.64 -31.02 16 8 C -0.25 -13.92 10.09 84.03 0.85 -13.07 16 9 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 10 C -0.03 -1.80 5.23 84.86 0.44 -1.35 16 11 N -0.95 -59.31 13.97 21.65 0.30 -59.01 16 12 Si 0.94 46.49 24.32 68.60 1.67 48.16 16 13 H -0.27 -12.53 6.58 99.48 0.65 -11.87 16 14 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 15 H -0.27 -12.89 6.66 99.48 0.66 -12.22 16 16 C 0.08 3.69 4.40 86.35 0.38 4.07 16 17 C 0.05 1.89 6.60 72.08 0.48 2.37 16 18 O -0.38 -14.11 10.12 -140.12 -1.42 -15.53 16 19 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 21 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.04 1.82 6.11 -2.38 -0.01 1.80 16 25 H 0.06 2.15 7.68 -2.39 -0.02 2.13 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 2.85 7.95 -2.39 -0.02 2.83 16 29 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.06 3.00 4.69 -2.38 -0.01 2.99 16 31 H 0.04 1.53 6.94 -2.39 -0.02 1.51 16 32 H 0.05 1.94 6.25 -2.39 -0.01 1.92 16 33 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -66.69 258.78 3.29 -63.40 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.98 Total: 6.17 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 4.79 Total: 0.48 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.34 Total: -90.04 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -2.81 Total: -28.17 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.67 Total: 48.16 kcal Total: -66.69 3.29 -63.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691315.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.723 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds