Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00373 * 2 1 4 4 C 1.52994 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.51160 * 305.00120 * 4 3 2 6 6 C 1.53291 * 109.51257 * 184.90151 * 4 3 2 7 7 N 1.47170 * 108.37642 * 187.82420 * 6 4 3 8 8 C 1.36933 * 120.94348 * 230.47200 * 7 6 4 9 9 H 1.08003 * 120.00019 * 153.27603 * 8 7 6 10 10 C 1.38816 * 120.00230 * 333.27765 * 8 7 6 11 11 N 1.31620 * 119.99629 * 343.56626 * 10 8 7 12 12 Si 1.86793 * 120.00187 * 163.56486 * 10 8 7 13 13 H 1.48495 * 109.47459 * 94.82698 * 12 10 8 14 14 H 1.48502 * 109.47070 * 214.83206 * 12 10 8 15 15 H 1.48503 * 109.47349 * 334.82574 * 12 10 8 16 16 C 1.47151 * 118.07287 * 50.45227 * 7 6 4 17 17 C 1.53301 * 108.38453 * 309.49490 * 16 7 6 18 18 O 1.42957 * 109.51397 * 65.10175 * 4 3 2 19 19 H 1.09004 * 109.46741 * 59.99793 * 1 2 3 20 20 H 1.08995 * 109.47221 * 300.00248 * 1 2 3 21 21 H 1.08996 * 109.47446 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46766 * 300.00510 * 3 2 1 23 23 H 1.09002 * 109.46818 * 59.99625 * 3 2 1 24 24 H 1.08994 * 109.47195 * 59.99855 * 5 4 3 25 25 H 1.09003 * 109.46960 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.46838 * 299.99758 * 5 4 3 27 27 H 1.08998 * 109.68291 * 307.49244 * 6 4 3 28 28 H 1.09002 * 109.68564 * 68.04883 * 6 4 3 29 29 H 0.97001 * 119.99659 * 180.02562 * 11 10 8 30 30 H 1.09007 * 109.68195 * 189.77685 * 16 7 6 31 31 H 1.08993 * 109.68514 * 69.22085 * 16 7 6 32 32 H 1.08999 * 109.51184 * 292.37888 * 17 16 7 33 33 H 1.09001 * 109.51008 * 172.22866 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9791 0.3199 1.1823 6 6 4.1595 2.5793 0.1241 7 7 5.6135 2.4556 -0.0668 8 6 6.4907 3.0075 0.8282 9 1 7.4768 2.5840 0.9491 10 6 6.1125 4.1114 1.5801 11 7 5.0647 4.8233 1.2227 12 14 7.0905 4.5864 3.0990 13 1 8.0967 5.6169 2.7376 14 1 6.1707 5.1324 4.1292 15 1 7.7814 3.3874 3.6379 16 6 6.0970 1.7214 -1.2469 17 6 5.3785 0.3683 -1.3023 18 8 3.9672 0.5812 -1.2213 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6886 1.8464 -0.8900 23 1 1.6886 1.8464 0.8900 24 1 3.5365 -0.6721 1.0930 25 1 5.0658 0.2346 1.1824 26 1 3.6512 0.7816 2.1137 27 1 3.7442 3.2363 -0.6401 28 1 3.9518 2.9883 1.1129 29 1 4.8006 5.5949 1.7479 30 1 7.1724 1.5629 -1.1655 31 1 5.8767 2.2912 -2.1495 32 1 5.7021 -0.2503 -0.4651 33 1 5.6179 -0.1329 -2.2401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599691316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -64.753574 kcal Electronic energy + Delta-G solvation = -15645.592085 eV Core-core repulsion = 13093.607998 eV Total energy + Delta-G solvation = -2551.984086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.03060 -37.08702 -34.36461 -32.23337 -31.19929 -27.85289 -27.01605 -26.07823 -24.73525 -23.10926 -21.16286 -18.55867 -17.02674 -16.00968 -15.84141 -15.33907 -14.94643 -14.43957 -13.99032 -13.80856 -13.33216 -13.05556 -12.68623 -12.18961 -11.71898 -11.40760 -11.27487 -11.08416 -10.90906 -10.64757 -10.55815 -10.26400 -10.14857 -9.89541 -9.44260 -9.30002 -8.89233 -8.50090 -6.69037 -5.82623 -3.25613 3.34457 3.41892 3.44293 4.09199 4.41664 4.50685 5.31075 5.37984 5.48326 5.49968 5.64552 5.69025 5.77973 5.90550 5.91448 6.05868 6.08307 6.19689 6.27911 6.40841 6.71390 6.73642 6.87542 6.97943 7.12776 7.47225 7.50632 7.73337 8.07318 8.36023 9.13393 9.76643 10.34664 11.25476 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.010024 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.665238 B = 2792.699665 C = 3208.031255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.080 3.920 4 C 0.092 3.908 5 C -0.156 4.156 6 C 0.159 3.841 7 N -0.591 5.591 8 C -0.250 4.250 9 H 0.068 0.932 10 C 0.002 3.998 11 N -0.904 5.904 12 Si 0.903 3.097 13 H -0.287 1.287 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.109 3.891 17 C 0.045 3.955 18 O -0.379 6.379 19 H 0.037 0.963 20 H 0.036 0.964 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.095 0.905 29 H 0.254 0.746 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.048 0.952 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -7.267 -1.528 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.003 3.997 4 C 0.052 3.948 5 C -0.213 4.213 6 C 0.033 3.967 7 N -0.315 5.315 8 C -0.380 4.380 9 H 0.086 0.914 10 C -0.197 4.197 11 N -0.549 5.549 12 Si 0.733 3.267 13 H -0.214 1.214 14 H -0.215 1.215 15 H -0.204 1.204 16 C -0.017 4.017 17 C -0.033 4.033 18 O -0.299 6.299 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.498 -7.322 -1.582 9.292 hybrid contribution 0.416 0.731 0.940 1.262 sum -5.081 -6.591 -0.642 8.347 Atomic orbital electron populations 1.22679 0.82251 1.02039 0.99603 1.87943 1.18532 1.28316 1.95318 1.22502 0.92519 0.84250 1.00407 1.22351 0.91092 0.96504 0.84890 1.22085 1.02305 0.99296 0.97649 1.21296 0.83492 0.89343 1.02565 1.43986 1.01313 1.62891 1.23297 1.19182 0.96929 1.07508 1.14357 0.91431 1.25044 0.98497 0.95476 1.00663 1.70024 1.28205 1.17828 1.38822 0.86265 0.79240 0.78304 0.82916 1.21404 1.21503 1.20371 1.21623 0.97288 0.91921 0.90876 1.23022 0.82152 0.97802 1.00313 1.87847 1.22255 1.81980 1.37784 0.94446 0.94493 0.90209 0.92934 0.92081 0.92882 0.91493 0.92576 0.95573 0.88718 0.93564 0.92060 0.95696 0.93425 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.68 9.79 -39.86 -0.39 -7.07 16 3 C 0.08 1.47 5.10 37.15 0.19 1.66 16 4 C 0.09 1.94 0.90 -90.47 -0.08 1.85 16 5 C -0.16 -3.12 7.89 37.16 0.29 -2.82 16 6 C 0.16 3.89 4.10 -3.53 -0.01 3.87 16 7 N -0.59 -15.07 2.57 -171.81 -0.44 -15.51 16 8 C -0.25 -6.85 9.65 -15.06 -0.15 -6.99 16 9 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 10 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 11 N -0.90 -26.00 11.14 55.49 0.62 -25.38 16 12 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.11 2.38 6.74 -3.53 -0.02 2.35 16 17 C 0.05 0.87 6.60 37.31 0.25 1.12 16 18 O -0.38 -8.11 10.19 -39.86 -0.41 -8.51 16 19 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 25 H 0.07 1.41 6.12 -51.93 -0.32 1.09 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.50 6.16 -51.93 -0.32 2.18 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.25 7.96 -51.92 -0.41 0.84 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.91 6.25 -51.93 -0.32 0.59 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 265.06 15.07 3.99 3.99 Total: -1.00 -30.33 265.06 -5.29 -35.62 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.12 Total: -2.13 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 1.49 Total: 2.51 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.18 Total: -40.89 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.80 Total: -15.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.33 -5.29 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.134 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds