Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00373 * 2 1 4 4 C 1.52994 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.51160 * 305.00120 * 4 3 2 6 6 C 1.53291 * 109.51257 * 184.90151 * 4 3 2 7 7 N 1.47170 * 108.37642 * 187.82420 * 6 4 3 8 8 C 1.36933 * 120.94348 * 230.47200 * 7 6 4 9 9 H 1.08003 * 120.00019 * 153.27603 * 8 7 6 10 10 C 1.38816 * 120.00230 * 333.27765 * 8 7 6 11 11 N 1.31620 * 119.99629 * 343.56626 * 10 8 7 12 12 Si 1.86793 * 120.00187 * 163.56486 * 10 8 7 13 13 H 1.48495 * 109.47459 * 94.82698 * 12 10 8 14 14 H 1.48502 * 109.47070 * 214.83206 * 12 10 8 15 15 H 1.48503 * 109.47349 * 334.82574 * 12 10 8 16 16 C 1.47151 * 118.07287 * 50.45227 * 7 6 4 17 17 C 1.53301 * 108.38453 * 309.49490 * 16 7 6 18 18 O 1.42957 * 109.51397 * 65.10175 * 4 3 2 19 19 H 1.09004 * 109.46741 * 59.99793 * 1 2 3 20 20 H 1.08995 * 109.47221 * 300.00248 * 1 2 3 21 21 H 1.08996 * 109.47446 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46766 * 300.00510 * 3 2 1 23 23 H 1.09002 * 109.46818 * 59.99625 * 3 2 1 24 24 H 1.08994 * 109.47195 * 59.99855 * 5 4 3 25 25 H 1.09003 * 109.46960 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.46838 * 299.99758 * 5 4 3 27 27 H 1.08998 * 109.68291 * 307.49244 * 6 4 3 28 28 H 1.09002 * 109.68564 * 68.04883 * 6 4 3 29 29 H 0.97001 * 119.99659 * 180.02562 * 11 10 8 30 30 H 1.09007 * 109.68195 * 189.77685 * 16 7 6 31 31 H 1.08993 * 109.68514 * 69.22085 * 16 7 6 32 32 H 1.08999 * 109.51184 * 292.37888 * 17 16 7 33 33 H 1.09001 * 109.51008 * 172.22866 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9791 0.3199 1.1823 6 6 4.1595 2.5793 0.1241 7 7 5.6135 2.4556 -0.0668 8 6 6.4907 3.0075 0.8282 9 1 7.4768 2.5840 0.9491 10 6 6.1125 4.1114 1.5801 11 7 5.0647 4.8233 1.2227 12 14 7.0905 4.5864 3.0990 13 1 8.0967 5.6169 2.7376 14 1 6.1707 5.1324 4.1292 15 1 7.7814 3.3874 3.6379 16 6 6.0970 1.7214 -1.2469 17 6 5.3785 0.3683 -1.3023 18 8 3.9672 0.5812 -1.2213 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6886 1.8464 -0.8900 23 1 1.6886 1.8464 0.8900 24 1 3.5365 -0.6721 1.0930 25 1 5.0658 0.2346 1.1824 26 1 3.6512 0.7816 2.1137 27 1 3.7442 3.2363 -0.6401 28 1 3.9518 2.9883 1.1129 29 1 4.8006 5.5949 1.7479 30 1 7.1724 1.5629 -1.1655 31 1 5.8767 2.2912 -2.1495 32 1 5.7021 -0.2503 -0.4651 33 1 5.6179 -0.1329 -2.2401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599691316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -85.121243 kcal Electronic energy + Delta-G solvation = -15646.475293 eV Core-core repulsion = 13093.607998 eV Total energy + Delta-G solvation = -2552.867295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68313 -38.44637 -36.27047 -33.84139 -33.19618 -29.59565 -28.29414 -27.89505 -26.19576 -24.94040 -22.90850 -20.28177 -18.94400 -17.56591 -17.31099 -16.93270 -16.44681 -16.13606 -15.64962 -15.52226 -15.07572 -14.64459 -14.50101 -13.67580 -13.23197 -13.05640 -12.89732 -12.76499 -12.60079 -12.41531 -12.22789 -12.14525 -11.84699 -11.76771 -11.07483 -10.75465 -10.58338 -10.46961 -8.70857 -7.89917 -5.36951 1.46066 1.47835 1.57834 2.46954 2.79832 2.88830 3.27348 3.61292 4.02405 4.09798 4.21438 4.40833 4.43750 4.49767 4.54593 4.61206 4.64942 4.69534 4.77379 4.86546 5.01598 5.10118 5.14360 5.22069 5.35567 5.51802 5.60965 6.23408 6.30570 6.44747 7.06996 7.75239 8.30515 9.16256 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.010024 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.665238 B = 2792.699665 C = 3208.031255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.087 3.913 4 C 0.095 3.905 5 C -0.144 4.144 6 C 0.170 3.830 7 N -0.609 5.609 8 C -0.262 4.262 9 H 0.071 0.929 10 C -0.049 4.049 11 N -0.936 5.936 12 Si 0.969 3.031 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.269 1.269 16 C 0.104 3.896 17 C 0.050 3.950 18 O -0.388 6.388 19 H 0.046 0.954 20 H 0.049 0.951 21 H 0.102 0.898 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.055 0.945 27 H -0.003 1.003 28 H 0.070 0.930 29 H 0.252 0.748 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 -8.585 -1.271 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.009 3.991 4 C 0.055 3.945 5 C -0.202 4.202 6 C 0.043 3.957 7 N -0.333 5.333 8 C -0.392 4.392 9 H 0.089 0.911 10 C -0.244 4.244 11 N -0.582 5.582 12 Si 0.796 3.204 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.193 1.193 16 C -0.021 4.021 17 C -0.028 4.028 18 O -0.308 6.308 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.120 0.880 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.605 -8.668 -1.342 10.409 hybrid contribution 0.436 1.121 0.790 1.439 sum -5.169 -7.547 -0.552 9.164 Atomic orbital electron populations 1.22954 0.79691 1.03916 1.00688 1.87884 1.21256 1.27363 1.95496 1.22320 0.90858 0.85054 1.00830 1.22204 0.92769 0.94214 0.85356 1.21964 1.01364 0.99707 0.97143 1.21059 0.83479 0.91107 1.00006 1.44255 1.01576 1.63160 1.24352 1.19513 0.97378 1.07508 1.14784 0.91097 1.25806 0.99696 0.95638 1.03299 1.70175 1.29824 1.18280 1.39873 0.85247 0.77755 0.78041 0.79338 1.21287 1.21699 1.19331 1.21801 0.98392 0.92781 0.89151 1.23101 0.80905 0.96324 1.02434 1.87847 1.23343 1.81676 1.37932 0.93557 0.93213 0.87976 0.92987 0.91293 0.91519 0.92820 0.92615 0.98485 0.91221 0.93919 0.90900 0.96573 0.92939 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.40 -13.18 9.79 -144.55 -1.42 -14.60 16 3 C 0.09 3.08 5.10 71.98 0.37 3.45 16 4 C 0.10 3.93 0.90 -10.70 -0.01 3.92 16 5 C -0.14 -5.61 7.89 71.98 0.57 -5.04 16 6 C 0.17 8.44 4.10 86.35 0.35 8.79 16 7 N -0.61 -31.23 2.57 -697.49 -1.79 -33.02 16 8 C -0.26 -14.36 9.65 84.03 0.81 -13.55 16 9 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 10 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 11 N -0.94 -54.84 11.14 21.65 0.24 -54.60 16 12 Si 0.97 44.34 29.58 68.60 2.03 46.37 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C 0.10 4.46 6.74 86.36 0.58 5.04 16 17 C 0.05 1.83 6.60 72.08 0.48 2.31 16 18 O -0.39 -16.04 10.19 -144.55 -1.47 -17.52 16 19 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 20 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 2.39 7.56 -2.39 -0.02 2.37 16 25 H 0.05 2.20 6.12 -2.39 -0.01 2.19 16 26 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.07 3.79 6.16 -2.39 -0.01 3.77 16 29 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.07 2.90 7.96 -2.38 -0.02 2.88 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 1.89 6.25 -2.39 -0.01 1.88 16 33 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -64.12 265.06 3.48 -60.65 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.07 Total: 8.29 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 4.82 Total: 4.42 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.55 Total: -87.61 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -2.89 Total: -32.11 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -64.12 3.48 -60.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.473 kcal (2) G-P(sol) polarization free energy of solvation -64.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds