Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47371 * 270.00235 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00068 * 3 2 1 6 6 H 1.48500 * 109.47524 * 149.99913 * 3 2 1 7 7 C 1.37880 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99832 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46722 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99888 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47407 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47269 * 305.00036 * 12 11 10 14 14 O 1.42903 * 109.46459 * 64.99929 * 12 11 10 15 15 C 1.53001 * 109.47376 * 184.99739 * 12 11 10 16 16 H 1.09000 * 110.32861 * 300.70659 * 15 12 11 17 17 C 1.54474 * 110.37235 * 178.45423 * 15 12 11 18 18 C 1.54512 * 104.06415 * 217.19246 * 17 15 12 19 19 C 1.54482 * 104.05931 * 359.97438 * 18 17 15 20 20 O 1.44421 * 110.37007 * 62.95529 * 15 12 11 21 21 H 0.96999 * 120.00286 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47000 * 60.00306 * 9 7 2 23 23 H 1.08992 * 109.47389 * 299.99813 * 9 7 2 24 24 H 1.00897 * 111.00315 * 56.04381 * 10 9 7 25 25 H 1.09005 * 109.47208 * 59.99899 * 11 10 9 26 26 H 1.08999 * 109.46786 * 299.99678 * 11 10 9 27 27 H 0.96700 * 114.00311 * 60.00313 * 14 12 11 28 28 H 1.09006 * 110.51131 * 335.83532 * 17 15 12 29 29 H 1.09000 * 110.51514 * 98.40732 * 17 15 12 30 30 H 1.08997 * 110.51320 * 118.64197 * 18 17 15 31 31 H 1.09000 * 110.50733 * 241.21872 * 18 17 15 32 32 H 1.09002 * 110.36778 * 142.80720 * 19 18 17 33 33 H 1.08996 * 110.37748 * 265.15099 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0018 13 1 3.2114 -5.9175 -0.8435 14 8 3.2723 -6.0157 1.2193 15 6 1.8052 -7.3843 -0.1281 16 1 1.1106 -7.5187 0.7011 17 6 2.8240 -8.5447 -0.1697 18 6 2.2125 -9.5452 -1.1760 19 6 0.8963 -8.8711 -1.6227 20 8 1.1042 -7.4600 -1.3885 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8406 -3.5486 0.7808 25 1 0.8809 -4.9812 -0.8914 26 1 0.8804 -4.9817 0.8886 27 1 2.7289 -6.1221 2.0121 28 1 3.7921 -8.1904 -0.5239 29 1 2.9226 -9.0020 0.8148 30 1 2.8783 -9.6855 -2.0275 31 1 2.0092 -10.4994 -0.6900 32 1 0.7148 -9.0574 -2.6812 33 1 0.0614 -9.2349 -1.0238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600752887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = -106.643876 kcal Electronic energy + Delta-G solvation = -14520.752016 eV Core-core repulsion = 11966.951430 eV Total energy + Delta-G solvation = -2553.800586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.70311 -37.14344 -34.58906 -32.36011 -32.07994 -30.42869 -27.71760 -25.38907 -22.95416 -21.59325 -21.21717 -20.88443 -16.85981 -16.75695 -16.31083 -15.83891 -15.24149 -14.67092 -14.44945 -13.87122 -13.55791 -13.41695 -12.92963 -12.31302 -11.86328 -11.72882 -11.47806 -11.37596 -11.17471 -11.04163 -10.74607 -10.67788 -10.56481 -10.10202 -9.81834 -9.58475 -9.07410 -8.43596 -7.23066 -5.98812 -4.00528 3.35982 3.41184 3.45697 3.70500 4.36153 4.48836 4.56482 4.65265 4.80804 4.94513 5.09870 5.29173 5.37049 5.39309 5.51415 5.59211 5.64711 5.69456 5.83623 5.91290 5.98994 6.35641 6.40694 6.77844 7.30430 7.47127 7.74147 7.83659 8.17608 8.47578 8.68647 9.09254 9.64226 11.12468 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.064601 B = 0.005279 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.326409 B = 5302.734496 C = 5549.087837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.687 5.687 11 C 0.033 3.967 12 C 0.116 3.884 13 H 0.113 0.887 14 O -0.551 6.551 15 C 0.045 3.955 16 H 0.066 0.934 17 C -0.143 4.143 18 C -0.156 4.156 19 C 0.043 3.957 20 O -0.360 6.360 21 H 0.261 0.739 22 H 0.027 0.973 23 H -0.015 1.015 24 H 0.333 0.667 25 H 0.079 0.921 26 H 0.017 0.983 27 H 0.370 0.630 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -18.468 0.648 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.097 4.097 12 C 0.056 3.944 13 H 0.131 0.869 14 O -0.356 6.356 15 C -0.014 4.014 16 H 0.084 0.916 17 C -0.181 4.181 18 C -0.194 4.194 19 C -0.034 4.034 20 O -0.279 6.279 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.002 0.998 24 H 0.150 0.850 25 H 0.098 0.902 26 H 0.035 0.965 27 H 0.216 0.784 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.078 -18.059 -0.590 18.329 hybrid contribution -0.551 0.555 1.360 1.569 sum 2.527 -17.505 0.771 17.703 Atomic orbital electron populations 1.69967 1.06106 1.26737 1.51091 1.24998 0.94878 0.99383 0.95378 0.86467 0.79679 0.82933 0.78134 1.20602 1.21335 1.19816 1.21206 0.93569 0.90239 1.50124 0.91910 1.19557 0.90622 0.87457 0.95676 1.60593 1.20982 1.00822 1.49362 1.22518 0.95297 0.91241 1.00674 1.22005 0.93962 0.90577 0.87844 0.86916 1.86640 1.37719 1.95731 1.15463 1.23763 0.93111 0.96828 0.87666 0.91565 1.22890 0.99975 0.95401 0.99787 1.22961 0.97620 0.99090 0.99757 1.23426 0.96499 0.81822 1.01666 1.89224 1.77278 1.23214 1.38190 0.92954 0.95452 0.99772 0.84969 0.90223 0.96530 0.78390 0.90133 0.90643 0.90679 0.90783 0.89083 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.10 9.32 -34.44 -0.32 -15.42 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.19 5.33 5.44 -4.98 -0.03 5.30 16 10 N -0.69 -15.68 6.49 -115.06 -0.75 -16.43 16 11 C 0.03 0.62 5.30 -3.82 -0.02 0.60 16 12 C 0.12 1.75 2.88 -26.73 -0.08 1.67 16 13 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 14 O -0.55 -7.77 12.57 -35.23 -0.44 -8.22 16 15 C 0.05 0.57 3.00 -25.96 -0.08 0.49 16 16 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.14 -1.47 6.37 -25.16 -0.16 -1.63 16 18 C -0.16 -1.37 7.09 -25.16 -0.18 -1.55 16 19 C 0.04 0.44 7.63 37.93 0.29 0.73 16 20 O -0.36 -5.14 10.78 -35.23 -0.38 -5.52 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 24 H 0.33 7.37 8.28 -39.29 -0.33 7.05 16 25 H 0.08 1.60 7.67 -51.93 -0.40 1.20 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.37 3.92 9.05 45.56 0.41 4.33 16 28 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -32.42 276.88 -6.84 -39.27 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.49 Total: 4.67 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.67 Total: -8.30 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.01 Total: -43.27 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.82 Total: -13.74 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.42 -6.84 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600752887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.377 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds