Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47371 * 270.00235 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00068 * 3 2 1 6 6 H 1.48500 * 109.47524 * 149.99913 * 3 2 1 7 7 C 1.37880 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99832 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46722 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99888 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47407 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47269 * 305.00036 * 12 11 10 14 14 O 1.42903 * 109.46459 * 64.99929 * 12 11 10 15 15 C 1.53001 * 109.47376 * 184.99739 * 12 11 10 16 16 H 1.09000 * 110.32861 * 300.70659 * 15 12 11 17 17 C 1.54474 * 110.37235 * 178.45423 * 15 12 11 18 18 C 1.54512 * 104.06415 * 217.19246 * 17 15 12 19 19 C 1.54482 * 104.05931 * 359.97438 * 18 17 15 20 20 O 1.44421 * 110.37007 * 62.95529 * 15 12 11 21 21 H 0.96999 * 120.00286 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47000 * 60.00306 * 9 7 2 23 23 H 1.08992 * 109.47389 * 299.99813 * 9 7 2 24 24 H 1.00897 * 111.00315 * 56.04381 * 10 9 7 25 25 H 1.09005 * 109.47208 * 59.99899 * 11 10 9 26 26 H 1.08999 * 109.46786 * 299.99678 * 11 10 9 27 27 H 0.96700 * 114.00311 * 60.00313 * 14 12 11 28 28 H 1.09006 * 110.51131 * 335.83532 * 17 15 12 29 29 H 1.09000 * 110.51514 * 98.40732 * 17 15 12 30 30 H 1.08997 * 110.51320 * 118.64197 * 18 17 15 31 31 H 1.09000 * 110.50733 * 241.21872 * 18 17 15 32 32 H 1.09002 * 110.36778 * 142.80720 * 19 18 17 33 33 H 1.08996 * 110.37748 * 265.15099 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0018 13 1 3.2114 -5.9175 -0.8435 14 8 3.2723 -6.0157 1.2193 15 6 1.8052 -7.3843 -0.1281 16 1 1.1106 -7.5187 0.7011 17 6 2.8240 -8.5447 -0.1697 18 6 2.2125 -9.5452 -1.1760 19 6 0.8963 -8.8711 -1.6227 20 8 1.1042 -7.4600 -1.3885 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8406 -3.5486 0.7808 25 1 0.8809 -4.9812 -0.8914 26 1 0.8804 -4.9817 0.8886 27 1 2.7289 -6.1221 2.0121 28 1 3.7921 -8.1904 -0.5239 29 1 2.9226 -9.0020 0.8148 30 1 2.8783 -9.6855 -2.0275 31 1 2.0092 -10.4994 -0.6900 32 1 0.7148 -9.0574 -2.6812 33 1 0.0614 -9.2349 -1.0238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600752887.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = -133.321247 kcal Electronic energy + Delta-G solvation = -14521.908834 eV Core-core repulsion = 11966.951430 eV Total energy + Delta-G solvation = -2554.957404 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68793 -38.40268 -36.41156 -34.42681 -32.96076 -31.65549 -29.38340 -27.03823 -24.32349 -23.27586 -22.49296 -21.91854 -18.71471 -17.82592 -17.67799 -16.92307 -16.78077 -16.28648 -15.96901 -15.01891 -14.87129 -14.69828 -14.52914 -14.13700 -13.40708 -13.07313 -12.76363 -12.65106 -12.61500 -12.47818 -12.19316 -12.17062 -12.07917 -11.52160 -11.42904 -10.85865 -10.68452 -10.68004 -9.15897 -8.24161 -6.36188 1.40882 1.43529 1.54967 2.39616 2.78145 3.08824 3.22530 3.63482 3.72456 3.89072 3.97685 4.09153 4.17950 4.30731 4.39424 4.54013 4.70560 4.77009 4.86034 4.97637 4.99320 5.11931 5.15529 5.19202 5.22260 5.59198 5.88548 5.99147 6.41206 6.68524 6.75807 6.87673 7.35040 8.87787 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.064601 B = 0.005279 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.326409 B = 5302.734496 C = 5549.087837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.688 5.688 11 C 0.035 3.965 12 C 0.131 3.869 13 H 0.095 0.905 14 O -0.556 6.556 15 C 0.047 3.953 16 H 0.079 0.921 17 C -0.139 4.139 18 C -0.150 4.150 19 C 0.034 3.966 20 O -0.397 6.397 21 H 0.266 0.734 22 H -0.004 1.004 23 H -0.038 1.038 24 H 0.339 0.661 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.387 0.613 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 -19.242 1.172 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.319 5.319 11 C -0.095 4.095 12 C 0.071 3.929 13 H 0.113 0.887 14 O -0.362 6.362 15 C -0.012 4.012 16 H 0.097 0.903 17 C -0.177 4.177 18 C -0.187 4.187 19 C -0.042 4.042 20 O -0.317 6.317 21 H 0.075 0.925 22 H 0.014 0.986 23 H -0.021 1.021 24 H 0.157 0.843 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.236 0.764 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.084 -18.870 -0.053 19.306 hybrid contribution -0.910 0.737 1.200 1.677 sum 3.174 -18.132 1.147 18.444 Atomic orbital electron populations 1.70095 1.07898 1.28128 1.51394 1.26003 0.95835 1.03547 0.94366 0.85266 0.78496 0.77602 0.78518 1.19817 1.20417 1.18640 1.21544 0.93817 0.91408 1.50908 0.91778 1.19214 0.90650 0.89086 0.93046 1.60456 1.20397 1.01326 1.49711 1.22581 0.96250 0.90627 1.00078 1.21679 0.92588 0.90659 0.87948 0.88672 1.86605 1.38053 1.95738 1.15830 1.23730 0.93806 0.95866 0.87752 0.90268 1.22872 0.98680 0.94789 1.01322 1.22956 0.96612 0.99505 0.99640 1.23681 0.97807 0.80033 1.02699 1.89193 1.77668 1.25917 1.38879 0.92510 0.98597 1.02066 0.84320 0.92074 0.95756 0.76409 0.91157 0.88705 0.90315 0.88341 0.88212 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.98 45.41 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -32.16 9.32 25.60 0.24 -31.92 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.84 5.44 85.56 0.47 12.30 16 10 N -0.69 -32.05 6.49 -517.94 -3.36 -35.41 16 11 C 0.03 1.32 5.30 86.30 0.46 1.78 16 12 C 0.13 3.91 2.88 30.60 0.09 4.00 16 13 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 14 O -0.56 -14.90 12.57 -148.98 -1.87 -16.77 16 15 C 0.05 1.13 3.00 31.10 0.09 1.22 16 16 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 17 C -0.14 -2.55 6.37 31.61 0.20 -2.34 16 18 C -0.15 -2.23 7.09 31.61 0.22 -2.01 16 19 C 0.03 0.63 7.63 72.49 0.55 1.19 16 20 O -0.40 -11.11 10.78 -148.98 -1.61 -12.72 16 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 22 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 23 H -0.04 -2.31 8.14 -2.39 -0.02 -2.32 16 24 H 0.34 15.09 8.28 -89.70 -0.74 14.34 16 25 H 0.06 2.56 7.67 -2.38 -0.02 2.54 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.39 7.45 9.05 -74.06 -0.67 6.78 16 28 H 0.07 1.44 7.87 -2.38 -0.02 1.42 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.12 276.88 -2.06 -72.18 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.32 Total: 18.37 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 2.78 Total: -15.29 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.08 Total: -93.21 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -3.48 Total: -29.49 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.12 -2.06 -72.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600752887.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.139 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds