Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48503 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47393 * 299.99811 * 3 2 1 6 6 H 1.48507 * 109.47054 * 59.99726 * 3 2 1 7 7 C 1.37883 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99461 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00419 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99702 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47145 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.46942 * 60.00442 * 12 11 10 14 14 O 1.42900 * 109.47128 * 300.00450 * 12 11 10 15 15 C 1.52997 * 109.47055 * 179.97438 * 12 11 10 16 16 H 1.09007 * 110.27295 * 57.91516 * 15 12 11 17 17 C 1.54947 * 110.30872 * 179.97438 * 15 12 11 18 18 C 1.55306 * 100.97824 * 155.44022 * 17 15 12 19 19 C 1.54429 * 102.23000 * 325.92130 * 18 17 15 20 20 O 1.43234 * 107.60919 * 21.29662 * 19 18 17 21 21 H 0.96994 * 119.99552 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46760 * 59.99914 * 9 7 2 23 23 H 1.09007 * 109.47058 * 300.00464 * 9 7 2 24 24 H 1.00898 * 111.00204 * 56.04863 * 10 9 7 25 25 H 1.09004 * 109.47018 * 59.99868 * 11 10 9 26 26 H 1.08998 * 109.47362 * 300.00078 * 11 10 9 27 27 H 0.96703 * 113.99884 * 299.99358 * 14 12 11 28 28 H 1.09002 * 111.12777 * 273.38292 * 17 15 12 29 29 H 1.08995 * 111.12300 * 37.50185 * 17 15 12 30 30 H 1.09001 * 110.84858 * 84.08537 * 18 17 15 31 31 H 1.09006 * 110.84549 * 207.69503 * 18 17 15 32 32 H 1.09007 * 109.79290 * 261.79697 * 19 18 17 33 33 H 1.09005 * 109.85163 * 140.83519 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5053 -4.9071 0.0024 12 6 2.5302 -6.0431 0.0031 13 1 3.1550 -5.9682 0.8931 14 8 3.3496 -5.9461 -1.1637 15 6 1.8008 -7.3880 0.0044 16 1 1.1430 -7.4618 -0.8617 17 6 2.8218 -8.5535 0.0044 18 6 1.9740 -9.6894 0.6394 19 6 1.0889 -8.9160 1.6411 20 8 1.0485 -7.5483 1.2175 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8399 -3.5484 0.7836 25 1 0.8808 -4.9821 -0.8878 26 1 0.8800 -4.9808 0.8921 27 1 2.8589 -6.0050 -1.9949 28 1 3.1251 -8.8102 -1.0106 29 1 3.6877 -8.3171 0.6226 30 1 1.3632 -10.1856 -0.1149 31 1 2.6115 -10.4063 1.1569 32 1 1.5193 -8.9810 2.6405 33 1 0.0815 -9.3325 1.6432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600752888.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -105.372356 kcal Electronic energy + Delta-G solvation = -14516.703924 eV Core-core repulsion = 11962.958475 eV Total energy + Delta-G solvation = -2553.745449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.72153 -37.01202 -34.59292 -32.37298 -32.13085 -30.42187 -27.74489 -25.37053 -22.75550 -21.76733 -21.08485 -20.99436 -17.12758 -16.77293 -16.30673 -15.35270 -15.34765 -14.65333 -14.39905 -14.07019 -13.50419 -13.19552 -12.84550 -12.40849 -11.90925 -11.77632 -11.49251 -11.44106 -11.19786 -11.08634 -10.73670 -10.71787 -10.61847 -10.06240 -9.69550 -9.39764 -9.03622 -8.43781 -7.18727 -5.98740 -4.00271 3.34535 3.41360 3.47427 3.63037 4.31425 4.44398 4.53663 4.69704 4.78032 5.01451 5.06985 5.24435 5.37200 5.45049 5.48604 5.57778 5.65199 5.72982 5.76226 5.86788 6.00872 6.35729 6.42920 6.94307 7.29529 7.47601 7.83267 7.91379 8.17996 8.45866 8.67916 9.09847 9.64504 11.12597 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.067367 B = 0.005247 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.533977 B = 5335.153605 C = 5581.706871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.681 5.681 11 C 0.031 3.969 12 C 0.115 3.885 13 H 0.098 0.902 14 O -0.540 6.540 15 C 0.050 3.950 16 H 0.071 0.929 17 C -0.142 4.142 18 C -0.158 4.158 19 C 0.049 3.951 20 O -0.372 6.372 21 H 0.260 0.740 22 H 0.026 0.974 23 H -0.015 1.015 24 H 0.328 0.672 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.372 0.628 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -18.553 0.578 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.312 5.312 11 C -0.099 4.099 12 C 0.055 3.945 13 H 0.116 0.884 14 O -0.344 6.344 15 C -0.008 4.008 16 H 0.089 0.911 17 C -0.180 4.180 18 C -0.196 4.196 19 C -0.027 4.027 20 O -0.291 6.291 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.003 0.997 24 H 0.145 0.855 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.218 0.782 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.435 -18.190 0.444 18.517 hybrid contribution -0.506 0.594 0.448 0.900 sum 2.929 -17.596 0.893 17.861 Atomic orbital electron populations 1.69984 1.06102 1.26612 1.51221 1.25006 0.94878 0.99396 0.95416 0.86417 0.80103 0.83301 0.77450 1.19614 1.21015 1.21126 1.21249 0.93606 0.90223 1.49918 0.91852 1.19570 0.90634 0.87526 0.95668 1.60615 1.20829 1.00769 1.48952 1.22512 0.95485 0.91223 1.00724 1.21948 0.92252 0.90787 0.89541 0.88379 1.86609 1.36452 1.95915 1.15457 1.23791 0.92225 0.96547 0.88267 0.91148 1.23201 0.98501 0.93933 1.02364 1.23161 0.98711 0.98609 0.99083 1.23132 0.99518 0.82198 0.97886 1.88463 1.72996 1.26233 1.41449 0.93022 0.95566 0.99690 0.85549 0.91828 0.94797 0.78182 0.89747 0.90097 0.90680 0.90123 0.91405 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.59 5.46 -17.81 -0.10 1.49 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -15.04 9.32 -34.44 -0.32 -15.36 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.19 5.29 5.44 -4.98 -0.03 5.26 16 10 N -0.68 -15.46 6.36 -115.05 -0.73 -16.19 16 11 C 0.03 0.58 5.25 -3.82 -0.02 0.56 16 12 C 0.11 1.73 2.96 -26.73 -0.08 1.65 16 13 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 14 O -0.54 -8.10 12.88 -35.23 -0.45 -8.55 16 15 C 0.05 0.63 3.15 -25.70 -0.08 0.55 16 16 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.14 -1.42 6.26 -24.48 -0.15 -1.57 16 18 C -0.16 -1.32 7.02 -24.76 -0.17 -1.50 16 19 C 0.05 0.51 7.79 37.91 0.30 0.80 16 20 O -0.37 -5.24 10.61 -35.23 -0.37 -5.61 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H -0.01 -0.43 8.14 -51.92 -0.42 -0.85 16 24 H 0.33 7.25 8.72 -39.29 -0.34 6.91 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.03 0.67 7.84 -51.93 -0.41 0.27 16 27 H 0.37 4.44 9.05 45.56 0.41 4.85 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 277.86 15.07 4.19 4.19 Total: -1.00 -32.56 277.86 -6.84 -39.40 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.53 Total: 4.54 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.66 Total: -8.12 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.00 Total: -43.05 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.83 Total: -14.17 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.56 -6.84 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600752888.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.969 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds