Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48503 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47393 * 299.99811 * 3 2 1 6 6 H 1.48507 * 109.47054 * 59.99726 * 3 2 1 7 7 C 1.37883 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99461 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00419 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47012 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99702 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47145 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.46942 * 60.00442 * 12 11 10 14 14 O 1.42900 * 109.47128 * 300.00450 * 12 11 10 15 15 C 1.52997 * 109.47055 * 179.97438 * 12 11 10 16 16 H 1.09007 * 110.27295 * 57.91516 * 15 12 11 17 17 C 1.54947 * 110.30872 * 179.97438 * 15 12 11 18 18 C 1.55306 * 100.97824 * 155.44022 * 17 15 12 19 19 C 1.54429 * 102.23000 * 325.92130 * 18 17 15 20 20 O 1.43234 * 107.60919 * 21.29662 * 19 18 17 21 21 H 0.96994 * 119.99552 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46760 * 59.99914 * 9 7 2 23 23 H 1.09007 * 109.47058 * 300.00464 * 9 7 2 24 24 H 1.00898 * 111.00204 * 56.04863 * 10 9 7 25 25 H 1.09004 * 109.47018 * 59.99868 * 11 10 9 26 26 H 1.08998 * 109.47362 * 300.00078 * 11 10 9 27 27 H 0.96703 * 113.99884 * 299.99358 * 14 12 11 28 28 H 1.09002 * 111.12777 * 273.38292 * 17 15 12 29 29 H 1.08995 * 111.12300 * 37.50185 * 17 15 12 30 30 H 1.09001 * 110.84858 * 84.08537 * 18 17 15 31 31 H 1.09006 * 110.84549 * 207.69503 * 18 17 15 32 32 H 1.09007 * 109.79290 * 261.79697 * 19 18 17 33 33 H 1.09005 * 109.85163 * 140.83519 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5053 -4.9071 0.0024 12 6 2.5302 -6.0431 0.0031 13 1 3.1550 -5.9682 0.8931 14 8 3.3496 -5.9461 -1.1637 15 6 1.8008 -7.3880 0.0044 16 1 1.1430 -7.4618 -0.8617 17 6 2.8218 -8.5535 0.0044 18 6 1.9740 -9.6894 0.6394 19 6 1.0889 -8.9160 1.6411 20 8 1.0485 -7.5483 1.2175 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8399 -3.5484 0.7836 25 1 0.8808 -4.9821 -0.8878 26 1 0.8800 -4.9808 0.8921 27 1 2.8589 -6.0050 -1.9949 28 1 3.1251 -8.8102 -1.0106 29 1 3.6877 -8.3171 0.6226 30 1 1.3632 -10.1856 -0.1149 31 1 2.6115 -10.4063 1.1569 32 1 1.5193 -8.9810 2.6405 33 1 0.0815 -9.3325 1.6432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600752888.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = -132.077487 kcal Electronic energy + Delta-G solvation = -14517.861945 eV Core-core repulsion = 11962.958475 eV Total energy + Delta-G solvation = -2554.903470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.69584 -38.30755 -36.41256 -34.43105 -33.00909 -31.64516 -29.41291 -27.03691 -24.22107 -23.25462 -22.32845 -22.13465 -18.68686 -18.10445 -17.63838 -16.94790 -16.43499 -16.33116 -15.73726 -15.50158 -14.95490 -14.46227 -14.27728 -14.07401 -13.42878 -13.13107 -12.79364 -12.68810 -12.62852 -12.51023 -12.20518 -12.18120 -12.07710 -11.65531 -11.41931 -10.81260 -10.68224 -10.40614 -9.13107 -8.24169 -6.35959 1.40922 1.41899 1.56483 2.39683 2.71928 3.08902 3.24045 3.60067 3.69271 3.85496 4.02605 4.09715 4.21187 4.31538 4.36483 4.50994 4.75821 4.80185 4.83963 4.93238 5.02963 5.05190 5.10796 5.22412 5.27357 5.59544 5.98963 6.05136 6.39980 6.65457 6.82768 6.90192 7.35243 8.88027 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.067367 B = 0.005247 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.533977 B = 5335.153605 C = 5581.706871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.678 5.678 11 C 0.033 3.967 12 C 0.128 3.872 13 H 0.092 0.908 14 O -0.548 6.548 15 C 0.051 3.949 16 H 0.078 0.922 17 C -0.138 4.138 18 C -0.147 4.147 19 C 0.038 3.962 20 O -0.405 6.405 21 H 0.266 0.734 22 H 0.000 1.000 23 H -0.044 1.044 24 H 0.332 0.668 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.385 0.615 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -19.300 0.291 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.308 5.308 11 C -0.097 4.097 12 C 0.068 3.932 13 H 0.110 0.890 14 O -0.355 6.355 15 C -0.007 4.007 16 H 0.096 0.904 17 C -0.175 4.175 18 C -0.185 4.185 19 C -0.038 4.038 20 O -0.325 6.325 21 H 0.075 0.925 22 H 0.018 0.982 23 H -0.026 1.026 24 H 0.149 0.851 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.234 0.766 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.609 -18.971 0.151 19.524 hybrid contribution -0.918 0.774 0.544 1.318 sum 3.691 -18.198 0.695 18.581 Atomic orbital electron populations 1.70109 1.07903 1.28042 1.51540 1.26010 0.95830 1.03563 0.94419 0.85215 0.78859 0.77929 0.77855 1.18646 1.20147 1.20183 1.21574 0.93818 0.91381 1.50679 0.91756 1.19236 0.90664 0.89181 0.93021 1.60522 1.20037 1.01210 1.49050 1.22614 0.96417 0.90685 1.00018 1.21728 0.91132 0.90759 0.89549 0.89041 1.86576 1.36842 1.95952 1.16094 1.23736 0.92913 0.95781 0.88262 0.90369 1.23180 0.97710 0.93250 1.03390 1.23150 0.98389 0.98118 0.98827 1.23377 1.00762 0.80880 0.98760 1.88431 1.73368 1.28687 1.42038 0.92538 0.98164 1.02590 0.85135 0.91858 0.96151 0.76589 0.88225 0.90624 0.89370 0.88119 0.90845 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.98 45.43 29.54 68.60 2.03 47.45 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 8 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 11.75 5.44 85.56 0.47 12.21 16 10 N -0.68 -31.36 6.36 -517.92 -3.29 -34.65 16 11 C 0.03 1.24 5.25 86.30 0.45 1.70 16 12 C 0.13 3.80 2.96 30.60 0.09 3.89 16 13 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 14 O -0.55 -15.76 12.88 -148.98 -1.92 -17.67 16 15 C 0.05 1.22 3.15 31.26 0.10 1.32 16 16 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 17 C -0.14 -2.43 6.26 32.05 0.20 -2.22 16 18 C -0.15 -2.04 7.02 31.87 0.22 -1.82 16 19 C 0.04 0.72 7.79 72.47 0.56 1.29 16 20 O -0.40 -11.15 10.61 -148.98 -1.58 -12.73 16 21 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 23 H -0.04 -2.67 8.14 -2.38 -0.02 -2.69 16 24 H 0.33 14.89 8.72 -89.70 -0.78 14.11 16 25 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.02 0.84 7.84 -2.39 -0.02 0.82 16 27 H 0.39 8.63 9.05 -74.06 -0.67 7.96 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.42 8.06 -2.39 -0.02 1.41 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -69.99 277.86 -2.04 -72.03 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.36 Total: 18.34 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 2.80 Total: -14.91 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -3.01 Total: -92.52 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -3.50 Total: -30.41 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.99 -2.04 -72.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600752888.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.043 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds