Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99709 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46771 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47270 * 59.99674 * 12 11 10 14 14 O 1.42896 * 109.47017 * 299.99625 * 12 11 10 15 15 C 1.52997 * 109.46883 * 179.97438 * 12 11 10 16 16 H 1.09006 * 109.82464 * 295.56396 * 15 12 11 17 17 C 1.54382 * 109.83048 * 174.58823 * 15 12 11 18 18 C 1.55306 * 102.25079 * 219.12795 * 17 15 12 19 19 C 1.54941 * 100.94316 * 34.13392 * 18 17 15 20 20 O 1.43235 * 109.83282 * 56.44953 * 15 12 11 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.00901 * 110.99951 * 303.95126 * 10 9 7 25 25 H 1.08996 * 109.46943 * 299.99256 * 11 10 9 26 26 H 1.08990 * 109.47266 * 59.99900 * 11 10 9 27 27 H 0.96698 * 114.00301 * 300.00483 * 14 12 11 28 28 H 1.09005 * 110.84386 * 337.31623 * 17 15 12 29 29 H 1.08997 * 110.84947 * 100.93777 * 17 15 12 30 30 H 1.09003 * 111.12464 * 276.21148 * 18 17 15 31 31 H 1.08998 * 111.12327 * 152.05105 * 18 17 15 32 32 H 1.09005 * 110.30823 * 204.64114 * 19 18 17 33 33 H 1.08997 * 110.39896 * 82.51582 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 6 2.5303 -6.0431 0.0006 13 1 3.1546 -5.9687 0.8910 14 8 3.3503 -5.9454 -1.1656 15 6 1.8009 -7.3880 0.0006 16 1 1.2353 -7.5018 0.9255 17 6 2.8222 -8.5376 -0.1357 18 6 2.0837 -9.5242 -1.0808 19 6 1.3083 -8.5368 -1.9889 20 8 0.9151 -7.4604 -1.1227 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 0.8902 23 1 0.6248 -2.5571 -0.8897 24 1 2.8405 -3.5487 -0.7809 25 1 0.8803 -4.9817 0.8897 26 1 0.8808 -4.9812 -0.8902 27 1 2.8602 -6.0037 -1.9971 28 1 3.7470 -8.1830 -0.5910 29 1 3.0173 -9.0000 0.8319 30 1 1.4003 -10.1649 -0.5235 31 1 2.7913 -10.1175 -1.6599 32 1 0.4288 -9.0227 -2.4117 33 1 1.9539 -8.1656 -2.7847 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600752889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -107.720469 kcal Electronic energy + Delta-G solvation = -14667.716420 eV Core-core repulsion = 12113.869149 eV Total energy + Delta-G solvation = -2553.847271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90345 -36.78768 -34.48674 -32.33872 -32.19327 -30.55912 -27.72819 -25.40821 -22.84148 -21.75184 -21.01980 -20.75108 -17.19505 -16.81211 -16.31265 -15.58622 -15.21110 -14.77912 -14.30585 -13.86621 -13.62567 -13.10091 -12.84212 -12.37758 -11.92641 -11.64502 -11.56776 -11.35064 -11.17750 -11.04686 -10.89793 -10.69837 -10.59855 -10.11595 -9.79393 -9.31445 -8.99503 -8.43795 -7.19644 -5.98494 -4.00101 3.34488 3.41268 3.47333 3.72641 4.35193 4.41871 4.52558 4.70252 4.78045 5.00861 5.12446 5.31839 5.37377 5.45187 5.56303 5.63519 5.65089 5.72037 5.77373 5.86147 6.07894 6.33126 6.52303 6.95214 7.31821 7.49123 7.81709 7.85424 8.18548 8.48993 8.70250 9.10175 9.64678 11.12803 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.074303 B = 0.005325 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.747348 B = 5256.507390 C = 5404.709484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.688 5.688 11 C 0.033 3.967 12 C 0.101 3.899 13 H 0.111 0.889 14 O -0.555 6.555 15 C 0.048 3.952 16 H 0.086 0.914 17 C -0.149 4.149 18 C -0.156 4.156 19 C 0.048 3.952 20 O -0.374 6.374 21 H 0.260 0.740 22 H 0.026 0.974 23 H -0.015 1.015 24 H 0.334 0.666 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.370 0.630 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -18.304 -2.406 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.319 5.319 11 C -0.097 4.097 12 C 0.042 3.958 13 H 0.129 0.871 14 O -0.360 6.360 15 C -0.011 4.011 16 H 0.103 0.897 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.028 4.028 20 O -0.294 6.294 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.003 0.997 24 H 0.151 0.849 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.217 0.783 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.806 -17.967 -1.297 18.411 hybrid contribution -0.400 0.673 -1.198 1.431 sum 3.406 -17.294 -2.495 17.801 Atomic orbital electron populations 1.69983 1.06101 1.26606 1.51196 1.25005 0.94875 0.99386 0.95416 0.86420 0.80098 0.83315 0.77455 1.19624 1.21116 1.21015 1.21250 0.93584 0.90255 1.49951 0.91890 1.19556 0.90648 0.87508 0.95655 1.60622 1.20936 1.00873 1.49464 1.22420 0.95405 0.91111 1.00802 1.22412 0.92280 0.91838 0.89300 0.87149 1.86525 1.37500 1.95994 1.15989 1.23572 0.90886 0.96099 0.90519 0.89654 1.23127 0.99787 0.95071 1.00694 1.23242 0.99623 0.98269 0.98207 1.23393 0.98938 0.87347 0.93162 1.88494 1.52960 1.52509 1.35391 0.93019 0.95565 0.99731 0.84917 0.91349 0.95303 0.78322 0.89100 0.90271 0.90666 0.90111 0.90007 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.51 -15.10 9.32 -34.44 -0.32 -15.42 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.19 5.33 5.44 -4.98 -0.03 5.30 16 10 N -0.69 -15.71 6.49 -115.06 -0.75 -16.46 16 11 C 0.03 0.62 5.21 -3.82 -0.02 0.60 16 12 C 0.10 1.50 3.16 -26.73 -0.08 1.42 16 13 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 14 O -0.56 -8.27 11.56 -40.66 -0.47 -8.74 16 15 C 0.05 0.59 3.42 -26.01 -0.09 0.50 16 16 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.15 -1.46 6.43 -24.78 -0.16 -1.62 16 18 C -0.16 -1.30 7.16 -24.48 -0.18 -1.47 16 19 C 0.05 0.48 7.78 38.18 0.30 0.77 16 20 O -0.37 -5.03 9.85 -40.66 -0.40 -5.43 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 24 H 0.33 7.48 8.11 -39.29 -0.32 7.17 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.03 0.57 7.61 -51.93 -0.40 0.17 16 27 H 0.37 4.83 8.70 45.56 0.40 5.22 16 28 H 0.09 0.96 7.03 -51.93 -0.37 0.59 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -32.08 274.42 -6.90 -38.98 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.46 Total: 5.62 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -0.68 Total: -8.42 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.01 Total: -43.37 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.87 Total: -14.17 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.08 -6.90 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600752889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.745 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds