Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99709 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46771 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47270 * 59.99674 * 12 11 10 14 14 O 1.42896 * 109.47017 * 299.99625 * 12 11 10 15 15 C 1.52997 * 109.46883 * 179.97438 * 12 11 10 16 16 H 1.09006 * 109.82464 * 295.56396 * 15 12 11 17 17 C 1.54382 * 109.83048 * 174.58823 * 15 12 11 18 18 C 1.55306 * 102.25079 * 219.12795 * 17 15 12 19 19 C 1.54941 * 100.94316 * 34.13392 * 18 17 15 20 20 O 1.43235 * 109.83282 * 56.44953 * 15 12 11 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.00901 * 110.99951 * 303.95126 * 10 9 7 25 25 H 1.08996 * 109.46943 * 299.99256 * 11 10 9 26 26 H 1.08990 * 109.47266 * 59.99900 * 11 10 9 27 27 H 0.96698 * 114.00301 * 300.00483 * 14 12 11 28 28 H 1.09005 * 110.84386 * 337.31623 * 17 15 12 29 29 H 1.08997 * 110.84947 * 100.93777 * 17 15 12 30 30 H 1.09003 * 111.12464 * 276.21148 * 18 17 15 31 31 H 1.08998 * 111.12327 * 152.05105 * 18 17 15 32 32 H 1.09005 * 110.30823 * 204.64114 * 19 18 17 33 33 H 1.08997 * 110.39896 * 82.51582 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 6 2.5303 -6.0431 0.0006 13 1 3.1546 -5.9687 0.8910 14 8 3.3503 -5.9454 -1.1656 15 6 1.8009 -7.3880 0.0006 16 1 1.2353 -7.5018 0.9255 17 6 2.8222 -8.5376 -0.1357 18 6 2.0837 -9.5242 -1.0808 19 6 1.3083 -8.5368 -1.9889 20 8 0.9151 -7.4604 -1.1227 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 0.8902 23 1 0.6248 -2.5571 -0.8897 24 1 2.8405 -3.5487 -0.7809 25 1 0.8803 -4.9817 0.8897 26 1 0.8808 -4.9812 -0.8902 27 1 2.8602 -6.0037 -1.9971 28 1 3.7470 -8.1830 -0.5910 29 1 3.0173 -9.0000 0.8319 30 1 1.4003 -10.1649 -0.5235 31 1 2.7913 -10.1175 -1.6599 32 1 0.4288 -9.0227 -2.4117 33 1 1.9539 -8.1656 -2.7847 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600752889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -133.435957 kcal Electronic energy + Delta-G solvation = -14668.831527 eV Core-core repulsion = 12113.869149 eV Total energy + Delta-G solvation = -2554.962378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87912 -38.09711 -36.29290 -34.41040 -33.03469 -31.77941 -29.39939 -27.05918 -24.27635 -23.25694 -22.29032 -21.87323 -18.71772 -18.11374 -17.69934 -16.95436 -16.53951 -16.43157 -15.78745 -15.20319 -14.88845 -14.57336 -14.34135 -13.86496 -13.46894 -13.03070 -12.81173 -12.68313 -12.63701 -12.45930 -12.34407 -12.09219 -12.00800 -11.64061 -11.46482 -10.98432 -10.69003 -10.27396 -9.14810 -8.24493 -6.36550 1.40558 1.41713 1.56254 2.39369 2.87252 3.08454 3.25003 3.49756 3.71511 3.94614 4.01319 4.17409 4.26802 4.31062 4.41604 4.54525 4.77415 4.82803 4.92499 4.95535 4.97906 5.04671 5.14445 5.23067 5.35158 5.59236 5.98904 6.07324 6.41026 6.65337 6.73073 6.87084 7.34764 8.87695 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.074303 B = 0.005325 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.747348 B = 5256.507390 C = 5404.709484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.685 5.685 11 C 0.035 3.965 12 C 0.113 3.887 13 H 0.112 0.888 14 O -0.560 6.560 15 C 0.050 3.950 16 H 0.089 0.911 17 C -0.143 4.143 18 C -0.146 4.146 19 C 0.038 3.962 20 O -0.402 6.402 21 H 0.266 0.734 22 H -0.001 1.001 23 H -0.043 1.043 24 H 0.337 0.663 25 H 0.062 0.938 26 H 0.018 0.982 27 H 0.378 0.622 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -18.980 -2.517 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.316 5.316 11 C -0.095 4.095 12 C 0.053 3.947 13 H 0.130 0.870 14 O -0.366 6.366 15 C -0.009 4.009 16 H 0.107 0.893 17 C -0.181 4.181 18 C -0.183 4.183 19 C -0.038 4.038 20 O -0.322 6.322 21 H 0.075 0.925 22 H 0.017 0.983 23 H -0.026 1.026 24 H 0.155 0.845 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.226 0.774 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.088 -18.675 -1.418 19.407 hybrid contribution -0.847 0.832 -1.193 1.683 sum 4.241 -17.843 -2.611 18.525 Atomic orbital electron populations 1.70109 1.07921 1.28060 1.51480 1.26017 0.95834 1.03584 0.94384 0.85209 0.78850 0.77886 0.77877 1.18635 1.20118 1.20154 1.21572 0.93800 0.91394 1.50773 0.91777 1.19223 0.90682 0.89204 0.92970 1.60518 1.20177 1.01335 1.49542 1.22515 0.96399 0.90640 0.99981 1.22283 0.91301 0.91660 0.89464 0.87004 1.86504 1.37688 1.96022 1.16388 1.23528 0.91395 0.95315 0.90628 0.89285 1.23096 0.98662 0.94315 1.02005 1.23232 0.99712 0.97744 0.97661 1.23634 0.99904 0.87092 0.93188 1.88473 1.53578 1.54046 1.36098 0.92520 0.98312 1.02565 0.84538 0.91938 0.96330 0.77434 0.89716 0.88561 0.89810 0.88142 0.88959 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.98 45.47 29.54 68.60 2.03 47.49 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -32.13 9.32 25.60 0.24 -31.89 16 8 H 0.06 3.74 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.84 5.44 85.55 0.47 12.31 16 10 N -0.68 -31.88 6.49 -517.94 -3.36 -35.24 16 11 C 0.03 1.33 5.21 86.31 0.45 1.78 16 12 C 0.11 3.27 3.16 30.60 0.10 3.37 16 13 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 14 O -0.56 -16.15 11.56 -143.79 -1.66 -17.82 16 15 C 0.05 1.16 3.42 31.06 0.11 1.27 16 16 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 17 C -0.14 -2.45 6.43 31.86 0.20 -2.25 16 18 C -0.15 -2.02 7.16 32.05 0.23 -1.80 16 19 C 0.04 0.68 7.78 72.65 0.56 1.24 16 20 O -0.40 -10.47 9.85 -143.79 -1.42 -11.88 16 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 22 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H -0.04 -2.66 8.14 -2.39 -0.02 -2.68 16 24 H 0.34 15.27 8.11 -89.69 -0.73 14.55 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.02 0.75 7.61 -2.39 -0.02 0.73 16 27 H 0.38 9.58 8.70 -74.06 -0.64 8.94 16 28 H 0.08 1.59 7.03 -2.38 -0.02 1.57 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.91 274.42 -1.59 -70.49 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.27 Total: 20.47 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 2.82 Total: -15.52 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -3.08 Total: -93.24 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -3.08 Total: -29.70 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.91 -1.59 -70.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600752889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.944 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds