Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46842 * 111.00041 * 169.99637 * 11 10 9 13 13 C 1.53041 * 109.52641 * 174.16189 * 12 11 10 14 14 H 1.09008 * 109.50235 * 299.20368 * 13 12 11 15 15 O 1.42898 * 109.50645 * 179.12487 * 13 12 11 16 16 C 1.53121 * 109.27518 * 59.17904 * 13 12 11 17 17 C 1.53116 * 109.16460 * 302.34805 * 16 13 12 18 18 H 1.09003 * 109.50443 * 297.71523 * 17 16 13 19 19 O 1.42890 * 109.50357 * 177.59565 * 17 16 13 20 20 C 1.46851 * 110.99898 * 45.79011 * 11 10 9 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08996 * 109.46789 * 294.18136 * 12 11 10 27 27 H 1.09007 * 109.45854 * 54.15867 * 12 11 10 28 28 H 0.96697 * 113.99963 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.51756 * 62.25537 * 16 13 12 30 30 H 1.09005 * 109.51926 * 182.44398 * 16 13 12 31 31 H 0.96698 * 114.00270 * 60.00143 * 19 17 16 32 32 H 1.08996 * 109.46471 * 305.85679 * 20 11 10 33 33 H 1.09004 * 109.45929 * 65.82278 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4165 -6.0652 -0.2370 13 6 1.6459 -7.3786 -0.0855 14 1 1.2499 -7.4535 0.9274 15 8 2.5230 -8.4783 -0.3373 16 6 0.4906 -7.4056 -1.0901 17 6 -0.4111 -6.1913 -0.8519 18 1 -0.8400 -6.2471 0.1486 19 8 -1.4605 -6.1789 -1.8216 20 6 0.4192 -4.9123 -0.9812 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 2.8244 -5.9977 -1.2455 27 1 3.2310 -6.0366 0.4869 28 1 2.1003 -9.3444 -0.2590 29 1 0.8889 -7.3703 -2.1041 30 1 -0.0872 -8.3202 -0.9563 31 1 -2.0263 -6.9627 -1.7991 32 1 -0.2168 -4.0463 -0.7981 33 1 0.8366 -4.8502 -1.9863 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610604442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -104.641318 kcal Electronic energy + Delta-G solvation = -14883.660653 eV Core-core repulsion = 12329.946904 eV Total energy + Delta-G solvation = -2553.713749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.40701 -36.61829 -36.16705 -33.23284 -31.64258 -29.44859 -28.70111 -25.26379 -23.21347 -22.38303 -20.38628 -19.54274 -17.44238 -16.94942 -16.50369 -15.46864 -14.97753 -14.59058 -14.52715 -13.88143 -13.48806 -13.14025 -12.99689 -12.54858 -12.10559 -12.10325 -11.43831 -11.00902 -10.94133 -10.73715 -10.55061 -10.39582 -10.17804 -9.91382 -9.69820 -9.37280 -9.08683 -8.34415 -7.83328 -6.00171 -4.02833 3.32841 3.38943 3.42286 3.75181 4.26215 4.46170 4.69103 4.84885 4.99895 5.06774 5.34917 5.36202 5.44844 5.55982 5.78646 5.85864 5.95689 6.04421 6.23060 6.29352 6.42247 6.54554 6.87795 7.40130 7.46626 7.58072 7.69820 7.75580 7.82760 8.02494 8.41179 9.03511 9.60988 11.11209 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045541 B = 0.006689 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.678207 B = 4184.762777 C = 4696.875892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.019 3.981 10 C 0.067 3.933 11 N -0.534 5.534 12 C 0.059 3.941 13 C 0.111 3.889 14 H 0.066 0.934 15 O -0.568 6.568 16 C -0.184 4.184 17 C 0.110 3.890 18 H 0.065 0.935 19 O -0.563 6.563 20 C 0.054 3.946 21 H 0.261 0.739 22 H 0.022 0.978 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.376 0.624 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.374 0.626 32 H 0.105 0.895 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -15.442 -0.800 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.060 4.060 11 N -0.261 5.261 12 C -0.069 4.069 13 C 0.052 3.948 14 H 0.084 0.916 15 O -0.372 6.372 16 C -0.222 4.222 17 C 0.051 3.949 18 H 0.083 0.917 19 O -0.367 6.367 20 C -0.073 4.073 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.223 0.777 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.220 0.780 32 H 0.123 0.877 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.217 -14.321 -0.579 14.335 hybrid contribution 0.131 -0.032 -0.613 0.627 sum 0.348 -14.353 -1.192 14.407 Atomic orbital electron populations 1.69970 1.06033 1.26666 1.50524 1.24996 0.94847 0.99237 0.95223 0.86572 0.79831 0.83384 0.78078 1.20695 1.21185 1.19855 1.21161 0.93037 0.90909 1.51048 0.92664 1.19277 0.94110 0.90447 0.97980 1.22338 0.96999 0.87135 0.99481 1.61821 1.11397 1.03835 1.49048 1.21913 0.95222 0.89151 1.00647 1.21682 0.89054 0.86912 0.97191 0.91649 1.86484 1.40055 1.16631 1.94070 1.23077 0.98477 0.99173 1.01522 1.21714 0.87179 0.94467 0.91569 0.91721 1.86541 1.44584 1.46427 1.59147 1.22059 0.93806 0.97434 0.94042 0.92940 0.95973 0.95530 0.91402 0.95783 0.94488 0.90106 0.77731 0.90690 0.91800 0.77988 0.87654 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.22 -27.89 -0.12 0.38 16 10 C 0.07 1.43 5.21 -3.83 -0.02 1.41 16 11 N -0.53 -9.90 4.81 -234.67 -1.13 -11.03 16 12 C 0.06 0.94 5.08 -3.83 -0.02 0.92 16 13 C 0.11 1.44 3.63 -26.65 -0.10 1.35 16 14 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 15 O -0.57 -6.79 13.32 -35.23 -0.47 -7.26 16 16 C -0.18 -2.24 5.25 -26.61 -0.14 -2.38 16 17 C 0.11 1.61 3.63 -26.65 -0.10 1.51 16 18 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 19 O -0.56 -7.97 13.32 -35.23 -0.47 -8.44 16 20 C 0.05 1.01 4.50 -3.83 -0.02 0.99 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.61 6.21 -51.93 -0.32 0.28 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 28 H 0.38 2.67 9.08 45.56 0.41 3.08 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.37 3.29 9.08 45.56 0.41 3.71 16 32 H 0.11 2.24 5.81 -51.93 -0.30 1.94 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 269.27 15.07 4.06 4.06 Total: -1.00 -32.18 269.27 -6.77 -38.95 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.56 Total: 2.62 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.92 Total: -9.42 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.39 Total: -37.25 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.94 Total: -15.71 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.18 -6.77 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610604442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.692 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds