Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46842 * 111.00041 * 169.99637 * 11 10 9 13 13 C 1.53041 * 109.52641 * 174.16189 * 12 11 10 14 14 H 1.09008 * 109.50235 * 299.20368 * 13 12 11 15 15 O 1.42898 * 109.50645 * 179.12487 * 13 12 11 16 16 C 1.53121 * 109.27518 * 59.17904 * 13 12 11 17 17 C 1.53116 * 109.16460 * 302.34805 * 16 13 12 18 18 H 1.09003 * 109.50443 * 297.71523 * 17 16 13 19 19 O 1.42890 * 109.50357 * 177.59565 * 17 16 13 20 20 C 1.46851 * 110.99898 * 45.79011 * 11 10 9 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.08996 * 109.46789 * 294.18136 * 12 11 10 27 27 H 1.09007 * 109.45854 * 54.15867 * 12 11 10 28 28 H 0.96697 * 113.99963 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.51756 * 62.25537 * 16 13 12 30 30 H 1.09005 * 109.51926 * 182.44398 * 16 13 12 31 31 H 0.96698 * 114.00270 * 60.00143 * 19 17 16 32 32 H 1.08996 * 109.46471 * 305.85679 * 20 11 10 33 33 H 1.09004 * 109.45929 * 65.82278 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4165 -6.0652 -0.2370 13 6 1.6459 -7.3786 -0.0855 14 1 1.2499 -7.4535 0.9274 15 8 2.5230 -8.4783 -0.3373 16 6 0.4906 -7.4056 -1.0901 17 6 -0.4111 -6.1913 -0.8519 18 1 -0.8400 -6.2471 0.1486 19 8 -1.4605 -6.1789 -1.8216 20 6 0.4192 -4.9123 -0.9812 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 2.8244 -5.9977 -1.2455 27 1 3.2310 -6.0366 0.4869 28 1 2.1003 -9.3444 -0.2590 29 1 0.8889 -7.3703 -2.1041 30 1 -0.0872 -8.3202 -0.9563 31 1 -2.0263 -6.9627 -1.7991 32 1 -0.2168 -4.0463 -0.7981 33 1 0.8366 -4.8502 -1.9863 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610604442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -133.052183 kcal Electronic energy + Delta-G solvation = -14884.892640 eV Core-core repulsion = 12329.946904 eV Total energy + Delta-G solvation = -2554.945736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65662 -37.64066 -37.54771 -35.22124 -33.13266 -30.98514 -30.19791 -27.02549 -24.91021 -23.63336 -21.96960 -20.92170 -18.77107 -18.37196 -17.99204 -16.84569 -16.56149 -16.14375 -16.02557 -15.31844 -14.83489 -14.56421 -14.24848 -14.09297 -13.92251 -13.28271 -13.10681 -12.86494 -12.65940 -12.44818 -12.03630 -11.81538 -11.69897 -11.29589 -11.20859 -11.12370 -10.72852 -10.55280 -9.38652 -8.21629 -6.33363 1.40001 1.41641 1.52957 2.37158 2.53902 3.11871 3.25830 3.58955 3.72210 3.85752 3.91790 4.17193 4.36090 4.41570 4.42162 4.50459 4.64242 4.70482 4.82809 4.88420 4.95859 4.99330 5.20950 5.41591 5.59658 5.73840 5.96113 6.12496 6.25112 6.82567 6.88435 6.89608 7.35842 8.90529 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045541 B = 0.006689 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.678207 B = 4184.762777 C = 4696.875892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.079 3.921 11 N -0.533 5.533 12 C 0.054 3.946 13 C 0.120 3.880 14 H 0.077 0.923 15 O -0.577 6.577 16 C -0.172 4.172 17 C 0.118 3.882 18 H 0.073 0.927 19 O -0.582 6.582 20 C 0.054 3.946 21 H 0.264 0.736 22 H -0.002 1.002 23 H -0.002 1.002 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.084 0.916 28 H 0.400 0.600 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.399 0.601 32 H 0.065 0.935 33 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -16.799 -0.579 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.048 4.048 11 N -0.259 5.259 12 C -0.074 4.074 13 C 0.061 3.939 14 H 0.095 0.905 15 O -0.385 6.385 16 C -0.210 4.210 17 C 0.058 3.942 18 H 0.090 0.910 19 O -0.390 6.390 20 C -0.074 4.074 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.093 0.907 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.103 0.897 28 H 0.251 0.749 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.874 -15.735 -0.359 15.764 hybrid contribution -0.113 0.333 -0.706 0.789 sum 0.761 -15.402 -1.065 15.457 Atomic orbital electron populations 1.70110 1.07844 1.27871 1.51285 1.25977 0.95770 1.03396 0.94515 0.85401 0.78686 0.78215 0.78458 1.19873 1.20589 1.18592 1.21611 0.93602 0.92174 1.51141 0.92044 1.19076 0.94267 0.92080 0.95392 1.22028 0.95802 0.87316 0.99607 1.61760 1.11658 1.03415 1.49108 1.22003 0.95315 0.89871 1.00172 1.21452 0.88650 0.85755 0.98051 0.90488 1.86433 1.40327 1.17698 1.94079 1.22967 0.97959 0.99513 1.00518 1.21513 0.87382 0.93215 0.92057 0.90959 1.86486 1.45022 1.48520 1.58982 1.21972 0.93761 0.98663 0.93014 0.92688 0.98385 0.98382 0.90747 0.96047 0.95458 0.89711 0.74928 0.91850 0.87518 0.75063 0.91614 0.96149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.59 4.22 29.85 0.13 1.71 16 10 C 0.08 3.50 5.21 86.30 0.45 3.95 16 11 N -0.53 -19.97 4.81 -896.35 -4.31 -24.28 16 12 C 0.05 1.68 5.08 86.33 0.44 2.12 16 13 C 0.12 2.80 3.63 30.65 0.11 2.91 16 14 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 15 O -0.58 -11.83 13.32 -148.98 -1.98 -13.81 16 16 C -0.17 -3.65 5.25 30.67 0.16 -3.49 16 17 C 0.12 3.29 3.63 30.65 0.11 3.40 16 18 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 19 O -0.58 -15.76 13.32 -148.98 -1.98 -17.74 16 20 C 0.05 2.07 4.50 86.33 0.39 2.46 16 21 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 22 H 0.00 -0.12 6.21 -2.39 -0.01 -0.14 16 23 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 2.54 8.12 -2.38 -0.02 2.52 16 28 H 0.40 3.95 9.08 -74.06 -0.67 3.28 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.40 6.01 9.08 -74.06 -0.67 5.33 16 32 H 0.07 3.00 5.81 -2.39 -0.01 2.99 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.95 269.27 -3.72 -74.67 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -0.24 Total: 9.62 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 2.48 Total: -17.97 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -4.02 Total: -81.66 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -3.97 Total: -31.55 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -70.95 -3.72 -74.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610604442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.380 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds