Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00071 * 2 1 4 4 C 1.53009 * 109.46814 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.28311 * 55.67385 * 4 3 2 6 6 C 1.54257 * 110.32339 * 293.54642 * 4 3 2 7 7 C 1.54381 * 105.14978 * 240.95010 * 6 4 3 8 8 N 1.48720 * 104.51692 * 336.27274 * 7 6 4 9 9 C 1.46900 * 111.01831 * 158.96284 * 8 7 6 10 10 C 1.50707 * 109.46999 * 74.48981 * 9 8 7 11 11 H 1.07999 * 119.99588 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00088 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00062 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00032 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47279 * 120.00054 * 14 12 10 17 17 H 1.48504 * 109.46966 * 240.00359 * 14 12 10 18 18 C 1.48567 * 104.28820 * 39.36098 * 8 7 6 19 19 H 1.08991 * 109.47363 * 300.00500 * 1 2 3 20 20 H 1.09007 * 109.46358 * 60.00026 * 1 2 3 21 21 H 1.08995 * 109.47063 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47223 * 59.99781 * 3 2 1 23 23 H 1.08991 * 109.47313 * 299.99431 * 3 2 1 24 24 H 1.09002 * 110.32715 * 359.90065 * 6 4 3 25 25 H 1.08998 * 110.32251 * 122.00592 * 6 4 3 26 26 H 1.09004 * 110.40867 * 94.98012 * 7 6 4 27 27 H 1.08996 * 110.41187 * 217.42234 * 7 6 4 28 28 H 1.08997 * 109.47620 * 194.49319 * 9 8 7 29 29 H 1.08999 * 109.47148 * 314.49752 * 9 8 7 30 30 H 0.97003 * 119.99847 * 180.02562 * 13 12 10 31 31 H 1.08999 * 110.41133 * 201.79165 * 18 8 7 32 32 H 1.09004 * 110.50861 * 79.40616 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1832 1.4095 -0.8434 6 6 4.3393 1.4261 1.3271 7 6 5.0237 2.6546 1.9641 8 7 5.3119 3.5570 0.8177 9 6 5.4967 4.9421 1.2709 10 6 6.8400 5.0765 1.9408 11 1 7.4914 4.2188 2.0213 12 6 7.2377 6.2945 2.4498 13 7 6.4446 7.3390 2.3512 14 14 8.9029 6.4612 3.2795 15 1 9.5982 5.1491 3.2621 16 1 9.7203 7.4648 2.5517 17 1 8.7138 6.9019 4.6850 18 6 4.1144 3.4372 -0.0534 19 1 -0.3633 0.5139 0.8898 20 1 -0.3632 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8031 2.2371 0.8900 23 1 1.8033 2.2371 -0.8900 24 1 3.5491 1.0528 1.9784 25 1 5.0718 0.6424 1.1341 26 1 4.3507 3.1409 2.6704 27 1 5.9485 2.3599 2.4601 28 1 5.4491 5.6142 0.4141 29 1 4.7099 5.2005 1.9796 30 1 6.7246 8.1960 2.7091 31 1 4.3560 3.7323 -1.0745 32 1 3.2977 4.0461 0.3343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -8.224374 kcal Electronic energy + Delta-G solvation = -12473.585378 eV Core-core repulsion = 10366.805453 eV Total energy + Delta-G solvation = -2106.779925 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.36831 -33.58936 -31.90480 -29.36878 -28.86362 -27.18592 -24.91956 -22.42556 -20.16752 -19.69074 -16.41019 -16.17415 -15.56851 -14.97447 -14.20040 -13.97691 -13.95412 -13.40921 -13.09462 -12.87467 -12.51024 -12.27002 -11.62187 -11.47667 -11.00456 -10.77987 -10.55275 -10.48254 -10.37649 -10.22577 -9.89789 -9.80006 -9.17435 -8.42181 -7.73025 -7.39381 -6.01918 -4.02929 1.61556 2.54776 3.32195 3.39383 3.45112 4.43962 4.73178 4.89166 4.96482 4.98256 5.14646 5.31400 5.39386 5.50586 5.51856 5.62660 5.71670 5.89852 6.11055 6.29045 6.31910 6.51745 6.64834 6.68690 7.16221 7.28789 7.79251 7.99943 8.17464 8.51736 9.05438 9.61517 11.09269 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.081033 B = 0.005520 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.457412 B = 5071.416497 C = 5225.233281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.265 6.265 3 C -0.072 4.072 4 C -0.076 4.076 5 H 0.083 0.917 6 C -0.120 4.120 7 C 0.045 3.955 8 N -0.507 5.507 9 C 0.181 3.819 10 C -0.504 4.504 11 H 0.064 0.936 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.898 3.102 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.041 3.959 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.098 0.902 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.029 0.971 29 H -0.006 1.006 30 H 0.260 0.740 31 H 0.074 0.926 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -11.590 -3.791 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.039 6.039 3 C -0.220 4.220 4 C -0.096 4.096 5 H 0.101 0.899 6 C -0.158 4.158 7 C -0.084 4.084 8 N -0.231 5.231 9 C 0.056 3.944 10 C -0.542 4.542 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.090 4.090 19 H 0.093 0.907 20 H 0.093 0.907 21 H 0.116 0.884 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.252 -12.416 -4.022 15.998 hybrid contribution -0.820 1.643 0.892 2.041 sum -10.072 -10.774 -3.129 15.076 Atomic orbital electron populations 1.23360 0.95016 1.06165 1.04740 1.86920 1.06399 1.12613 1.98000 1.23600 1.00577 0.93159 1.04713 1.21681 0.90705 0.97552 0.99674 0.89879 1.22451 0.99604 0.98304 0.95459 1.22970 0.99212 0.92519 0.93655 1.65513 1.32425 1.11031 1.14175 1.19894 0.96748 0.82787 0.94992 1.21178 1.01683 0.95488 1.35874 0.91818 1.24998 0.97551 0.95771 0.96397 1.69973 1.36650 1.00638 1.46801 0.86432 0.83864 0.78155 0.78941 1.19606 1.21003 1.21124 1.23078 0.93397 0.93131 0.99349 0.90652 0.90725 0.88361 0.90141 0.90166 0.91417 0.91413 0.94698 0.90470 0.95261 0.98828 0.93013 0.90807 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.76 101.05 1.09 0.02 16 2 S -0.27 -3.20 21.65 -107.50 -2.33 -5.53 16 3 C -0.07 -0.90 5.10 37.16 0.19 -0.72 16 4 C -0.08 -1.14 3.09 -89.24 -0.28 -1.41 16 5 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.12 -1.89 6.24 -25.35 -0.16 -2.05 16 7 C 0.04 0.88 6.13 -2.09 -0.01 0.87 16 8 N -0.51 -11.24 5.32 -231.26 -1.23 -12.47 16 9 C 0.18 4.82 4.60 -4.97 -0.02 4.80 16 10 C -0.50 -14.45 8.97 -34.44 -0.31 -14.76 16 11 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 14 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.04 0.74 6.01 -2.18 -0.01 0.72 16 19 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 21 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.99 7.39 -51.93 -0.38 0.61 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.71 7.75 -51.93 -0.40 0.31 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 29 H -0.01 -0.17 7.77 -51.93 -0.40 -0.57 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.64 7.72 -51.93 -0.40 0.23 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -30.14 275.58 -8.66 -38.81 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -5.36 Total: -4.44 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 0.39 Total: -11.08 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.50 Total: -38.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.33 Total: -5.53 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.14 -8.66 -38.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.581 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds