Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00071 * 2 1 4 4 C 1.53009 * 109.46814 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.28311 * 55.67385 * 4 3 2 6 6 C 1.54257 * 110.32339 * 293.54642 * 4 3 2 7 7 C 1.54381 * 105.14978 * 240.95010 * 6 4 3 8 8 N 1.48720 * 104.51692 * 336.27274 * 7 6 4 9 9 C 1.46900 * 111.01831 * 158.96284 * 8 7 6 10 10 C 1.50707 * 109.46999 * 74.48981 * 9 8 7 11 11 H 1.07999 * 119.99588 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00088 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00062 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00032 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47279 * 120.00054 * 14 12 10 17 17 H 1.48504 * 109.46966 * 240.00359 * 14 12 10 18 18 C 1.48567 * 104.28820 * 39.36098 * 8 7 6 19 19 H 1.08991 * 109.47363 * 300.00500 * 1 2 3 20 20 H 1.09007 * 109.46358 * 60.00026 * 1 2 3 21 21 H 1.08995 * 109.47063 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47223 * 59.99781 * 3 2 1 23 23 H 1.08991 * 109.47313 * 299.99431 * 3 2 1 24 24 H 1.09002 * 110.32715 * 359.90065 * 6 4 3 25 25 H 1.08998 * 110.32251 * 122.00592 * 6 4 3 26 26 H 1.09004 * 110.40867 * 94.98012 * 7 6 4 27 27 H 1.08996 * 110.41187 * 217.42234 * 7 6 4 28 28 H 1.08997 * 109.47620 * 194.49319 * 9 8 7 29 29 H 1.08999 * 109.47148 * 314.49752 * 9 8 7 30 30 H 0.97003 * 119.99847 * 180.02562 * 13 12 10 31 31 H 1.08999 * 110.41133 * 201.79165 * 18 8 7 32 32 H 1.09004 * 110.50861 * 79.40616 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1832 1.4095 -0.8434 6 6 4.3393 1.4261 1.3271 7 6 5.0237 2.6546 1.9641 8 7 5.3119 3.5570 0.8177 9 6 5.4967 4.9421 1.2709 10 6 6.8400 5.0765 1.9408 11 1 7.4914 4.2188 2.0213 12 6 7.2377 6.2945 2.4498 13 7 6.4446 7.3390 2.3512 14 14 8.9029 6.4612 3.2795 15 1 9.5982 5.1491 3.2621 16 1 9.7203 7.4648 2.5517 17 1 8.7138 6.9019 4.6850 18 6 4.1144 3.4372 -0.0534 19 1 -0.3633 0.5139 0.8898 20 1 -0.3632 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8031 2.2371 0.8900 23 1 1.8033 2.2371 -0.8900 24 1 3.5491 1.0528 1.9784 25 1 5.0718 0.6424 1.1341 26 1 4.3507 3.1409 2.6704 27 1 5.9485 2.3599 2.4601 28 1 5.4491 5.6142 0.4141 29 1 4.7099 5.2005 1.9796 30 1 6.7246 8.1960 2.7091 31 1 4.3560 3.7323 -1.0745 32 1 3.2977 4.0461 0.3343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -27.461762 kcal Electronic energy + Delta-G solvation = -12474.419574 eV Core-core repulsion = 10366.805453 eV Total energy + Delta-G solvation = -2107.614121 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.90044 -35.48733 -33.72030 -30.68615 -29.73075 -29.02458 -26.46767 -24.30357 -21.87832 -21.04313 -18.46400 -17.39218 -16.98193 -16.63217 -15.86774 -15.25387 -15.02681 -14.73313 -14.37780 -14.07226 -14.01969 -13.65900 -13.31276 -13.00629 -12.89891 -12.48494 -12.34991 -11.93973 -11.83420 -11.73408 -11.52678 -11.26864 -10.86635 -10.62832 -9.21289 -8.64056 -8.22911 -6.33288 0.73469 1.40220 1.40820 1.55031 1.69931 2.39624 3.09567 3.32329 3.71379 3.78844 3.90693 4.28704 4.34816 4.37621 4.38429 4.44557 4.59777 4.71434 4.80466 4.90703 4.93537 5.01906 5.06492 5.19786 5.23281 5.35684 5.63030 5.99295 6.21588 6.49464 6.82367 7.36905 8.88693 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.081033 B = 0.005520 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.457412 B = 5071.416497 C = 5225.233281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.064 4.064 4 C -0.064 4.064 5 H 0.089 0.911 6 C -0.106 4.106 7 C 0.043 3.957 8 N -0.522 5.522 9 C 0.197 3.803 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.971 3.029 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.038 3.962 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.113 0.887 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.003 0.997 29 H -0.033 1.033 30 H 0.265 0.735 31 H 0.078 0.922 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 -12.873 -3.854 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.071 6.071 3 C -0.213 4.213 4 C -0.084 4.084 5 H 0.108 0.892 6 C -0.145 4.145 7 C -0.085 4.085 8 N -0.246 5.246 9 C 0.071 3.929 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.576 5.576 14 Si 0.796 3.204 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.092 4.092 19 H 0.101 0.899 20 H 0.104 0.896 21 H 0.132 0.868 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.021 0.979 29 H -0.015 1.015 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.594 -13.717 -4.094 17.233 hybrid contribution -0.798 2.014 0.884 2.340 sum -10.392 -11.703 -3.210 15.977 Atomic orbital electron populations 1.23440 0.91586 1.07481 1.05698 1.87002 1.10197 1.11823 1.98105 1.23433 0.98513 0.93937 1.05386 1.21550 0.92719 0.94839 0.99334 0.89242 1.22363 0.99882 0.96426 0.95783 1.22983 0.98878 0.93606 0.93044 1.65396 1.35201 1.08633 1.15401 1.19534 0.95309 0.85046 0.93044 1.21469 1.02536 0.95713 1.36564 0.92211 1.25931 1.01657 0.95247 0.96810 1.70090 1.38709 1.01255 1.47527 0.85302 0.78763 0.78420 0.77948 1.18832 1.20195 1.20226 1.23154 0.91784 0.95684 0.98552 0.89941 0.89555 0.86841 0.90247 0.88806 0.89865 0.90597 0.95894 0.91615 0.97866 1.01546 0.92603 0.90346 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.76 113.37 1.22 -0.39 16 2 S -0.30 -6.45 21.65 -56.49 -1.22 -7.67 16 3 C -0.06 -1.48 5.10 71.99 0.37 -1.11 16 4 C -0.06 -1.83 3.09 -9.90 -0.03 -1.86 16 5 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 6 C -0.11 -3.22 6.24 31.49 0.20 -3.02 16 7 C 0.04 1.71 6.13 86.42 0.53 2.24 16 8 N -0.52 -23.55 5.32 -885.57 -4.72 -28.27 16 9 C 0.20 10.89 4.60 85.56 0.39 11.28 16 10 C -0.52 -30.74 8.97 25.60 0.23 -30.51 16 11 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 12 C 0.00 0.08 5.46 84.65 0.46 0.54 16 13 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 14 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 15 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 C 0.04 1.37 6.01 86.45 0.52 1.89 16 19 H 0.08 1.08 8.14 -2.40 -0.02 1.06 16 20 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.08 2.28 7.39 -2.39 -0.02 2.26 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.02 0.95 7.75 -2.38 -0.02 0.93 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 29 H -0.03 -1.96 7.77 -2.39 -0.02 -1.98 16 30 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 32 H 0.03 1.20 7.72 -2.39 -0.02 1.18 16 Total: -1.00 -65.05 275.58 1.32 -63.73 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.06 Total: 2.91 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.89 Total: -20.94 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -4.43 Total: -85.08 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.22 Total: -7.67 kcal Total: -65.05 1.32 -63.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.264 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds