Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81400 * 103.00335 * 2 1 4 4 C 1.53000 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.76949 * 308.20004 * 4 3 2 6 6 C 1.55138 * 110.70939 * 71.40353 * 4 3 2 7 7 C 1.54906 * 101.65573 * 154.03414 * 6 4 3 8 8 N 1.47840 * 104.79510 * 322.92945 * 7 6 4 9 9 C 1.46897 * 110.99988 * 146.36231 * 8 7 6 10 10 C 1.50702 * 109.46815 * 69.15983 * 9 8 7 11 11 H 1.08001 * 120.00089 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99842 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99901 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99734 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47290 * 59.99906 * 14 12 10 16 16 H 1.48504 * 109.47068 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47146 * 299.99691 * 14 12 10 18 18 C 1.47446 * 108.56768 * 24.09731 * 8 7 6 19 19 H 1.09007 * 109.46844 * 59.99987 * 1 2 3 20 20 H 1.08996 * 109.47551 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46996 * 300.00485 * 1 2 3 22 22 H 1.09003 * 109.46581 * 60.00198 * 3 2 1 23 23 H 1.08995 * 109.47360 * 299.99938 * 3 2 1 24 24 H 1.09006 * 110.98929 * 35.93882 * 6 4 3 25 25 H 1.09000 * 111.02473 * 272.14364 * 6 4 3 26 26 H 1.08998 * 110.36925 * 204.09914 * 7 6 4 27 27 H 1.08996 * 110.36967 * 81.76153 * 7 6 4 28 28 H 1.09000 * 109.47549 * 189.15647 * 9 8 7 29 29 H 1.08995 * 109.47180 * 309.16230 * 9 8 7 30 30 H 0.97000 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.88895 * 118.41939 * 18 8 7 32 32 H 1.09001 * 109.88694 * 239.60335 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1971 1.3571 0.8018 6 6 4.3402 1.5416 -1.3744 7 6 5.6402 2.3834 -1.4061 8 7 5.2774 3.6628 -0.7602 9 6 6.4137 4.2149 -0.0106 10 6 7.4796 4.6669 -0.9752 11 1 7.3283 4.5548 -2.0387 12 6 8.6486 5.2227 -0.5001 13 7 8.8331 5.3588 0.7949 14 14 9.9702 5.7823 -1.6957 15 1 9.4153 6.8270 -2.5935 16 1 11.1194 6.3395 -0.9380 17 1 10.4268 4.6247 -2.5061 18 6 4.1225 3.4301 0.1265 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8032 2.2370 0.8901 23 1 1.8033 2.2371 -0.8899 24 1 3.6718 1.8248 -2.1876 25 1 4.5644 0.4755 -1.4094 26 1 5.9567 2.5541 -2.4350 27 1 6.4291 1.8844 -0.8433 28 1 6.0783 5.0644 0.5843 29 1 6.8213 3.4483 0.6482 30 1 9.6557 5.7494 1.1292 31 1 4.3946 3.6577 1.1572 32 1 3.2846 4.0541 -0.1845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -8.346903 kcal Electronic energy + Delta-G solvation = -12465.398802 eV Core-core repulsion = 10358.613563 eV Total energy + Delta-G solvation = -2106.785239 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.40547 -33.54591 -31.88924 -29.39674 -28.90548 -27.15057 -24.85891 -22.38842 -20.24795 -19.74886 -16.68182 -16.10745 -15.35143 -14.63071 -14.36963 -14.16035 -13.77062 -13.35929 -13.29077 -12.75517 -12.58101 -12.25625 -11.56336 -11.47120 -11.02072 -10.78936 -10.69984 -10.55578 -10.30166 -10.21995 -9.95019 -9.76373 -9.15139 -8.41102 -7.73387 -7.21879 -6.00374 -4.01674 1.61956 2.55302 3.35646 3.39177 3.42554 4.44971 4.82236 4.83346 4.96183 4.97520 4.98712 5.33691 5.37572 5.49522 5.50488 5.61358 5.78950 5.92942 6.05010 6.24501 6.34838 6.50525 6.68570 6.73459 7.22153 7.34940 7.83271 8.07242 8.22315 8.56012 9.06169 9.62662 11.10632 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.088004 B = 0.005458 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.091911 B = 5128.808812 C = 5268.863573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.269 6.269 3 C -0.065 4.065 4 C -0.095 4.095 5 H 0.080 0.920 6 C -0.122 4.122 7 C 0.057 3.943 8 N -0.528 5.528 9 C 0.188 3.812 10 C -0.507 4.507 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.053 3.947 19 H 0.074 0.926 20 H 0.097 0.903 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.029 0.971 29 H -0.008 1.008 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 -8.551 -1.304 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.043 6.043 3 C -0.214 4.214 4 C -0.116 4.116 5 H 0.098 0.902 6 C -0.160 4.160 7 C -0.071 4.071 8 N -0.253 5.253 9 C 0.062 3.938 10 C -0.545 4.545 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.077 4.077 19 H 0.093 0.907 20 H 0.116 0.884 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.281 -8.981 -1.541 16.106 hybrid contribution 0.135 0.820 0.171 0.849 sum -13.145 -8.161 -1.370 15.533 Atomic orbital electron populations 1.23352 0.94970 1.06154 1.04703 1.86962 1.06471 1.12834 1.98045 1.23449 1.00137 0.93046 1.04770 1.22213 0.91529 0.98551 0.99306 0.90161 1.22822 0.97783 0.99590 0.95816 1.22845 0.94944 0.89085 1.00220 1.63685 1.07389 1.24094 1.30093 1.19937 0.86852 0.94192 0.92803 1.21124 1.00174 1.39711 0.93523 0.91979 1.24995 0.98414 0.96041 0.95193 1.69950 1.26603 1.45293 1.12156 0.86551 0.80907 0.79029 0.80864 1.20162 1.21369 1.20270 1.22826 0.95599 0.92545 0.96768 0.90660 0.88395 0.90727 0.90207 0.89855 0.91159 0.91332 0.90970 0.93831 0.95330 0.98978 0.92894 0.93123 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.76 101.05 1.09 0.04 16 2 S -0.27 -3.28 22.09 -107.50 -2.38 -5.65 16 3 C -0.07 -0.81 5.27 37.16 0.20 -0.61 16 4 C -0.10 -1.45 2.92 -88.80 -0.26 -1.71 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 6 C -0.12 -1.92 6.22 -24.59 -0.15 -2.07 16 7 C 0.06 1.13 6.14 -2.30 -0.01 1.11 16 8 N -0.53 -11.67 5.15 -232.70 -1.20 -12.87 16 9 C 0.19 4.99 4.33 -4.98 -0.02 4.97 16 10 C -0.51 -14.53 8.80 -34.44 -0.30 -14.83 16 11 H 0.06 1.76 7.76 -52.49 -0.41 1.36 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 14 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.05 0.95 6.46 -2.83 -0.02 0.94 16 19 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 20 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 23 H 0.08 0.98 8.00 -51.93 -0.42 0.57 16 24 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 27 H 0.04 0.92 7.62 -51.93 -0.40 0.53 16 28 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 29 H -0.01 -0.21 7.85 -51.93 -0.41 -0.62 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.05 0.94 7.55 -51.93 -0.39 0.55 16 32 H 0.06 1.08 7.82 -51.93 -0.41 0.67 16 LS Contribution 275.63 15.07 4.15 4.15 Total: -1.00 -30.15 275.63 -8.64 -38.79 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -5.35 Total: -4.26 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 0.42 Total: -10.68 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.46 Total: -39.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.38 Total: -5.65 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.15 -8.64 -38.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.442 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds