Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81400 * 103.00335 * 2 1 4 4 C 1.53000 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.76949 * 308.20004 * 4 3 2 6 6 C 1.55138 * 110.70939 * 71.40353 * 4 3 2 7 7 C 1.54906 * 101.65573 * 154.03414 * 6 4 3 8 8 N 1.47840 * 104.79510 * 322.92945 * 7 6 4 9 9 C 1.46897 * 110.99988 * 146.36231 * 8 7 6 10 10 C 1.50702 * 109.46815 * 69.15983 * 9 8 7 11 11 H 1.08001 * 120.00089 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99842 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99901 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99734 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47290 * 59.99906 * 14 12 10 16 16 H 1.48504 * 109.47068 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47146 * 299.99691 * 14 12 10 18 18 C 1.47446 * 108.56768 * 24.09731 * 8 7 6 19 19 H 1.09007 * 109.46844 * 59.99987 * 1 2 3 20 20 H 1.08996 * 109.47551 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46996 * 300.00485 * 1 2 3 22 22 H 1.09003 * 109.46581 * 60.00198 * 3 2 1 23 23 H 1.08995 * 109.47360 * 299.99938 * 3 2 1 24 24 H 1.09006 * 110.98929 * 35.93882 * 6 4 3 25 25 H 1.09000 * 111.02473 * 272.14364 * 6 4 3 26 26 H 1.08998 * 110.36925 * 204.09914 * 7 6 4 27 27 H 1.08996 * 110.36967 * 81.76153 * 7 6 4 28 28 H 1.09000 * 109.47549 * 189.15647 * 9 8 7 29 29 H 1.08995 * 109.47180 * 309.16230 * 9 8 7 30 30 H 0.97000 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.88895 * 118.41939 * 18 8 7 32 32 H 1.09001 * 109.88694 * 239.60335 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1971 1.3571 0.8018 6 6 4.3402 1.5416 -1.3744 7 6 5.6402 2.3834 -1.4061 8 7 5.2774 3.6628 -0.7602 9 6 6.4137 4.2149 -0.0106 10 6 7.4796 4.6669 -0.9752 11 1 7.3283 4.5548 -2.0387 12 6 8.6486 5.2227 -0.5001 13 7 8.8331 5.3588 0.7949 14 14 9.9702 5.7823 -1.6957 15 1 9.4153 6.8270 -2.5935 16 1 11.1194 6.3395 -0.9380 17 1 10.4268 4.6247 -2.5061 18 6 4.1225 3.4301 0.1265 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8032 2.2370 0.8901 23 1 1.8033 2.2371 -0.8899 24 1 3.6718 1.8248 -2.1876 25 1 4.5644 0.4755 -1.4094 26 1 5.9567 2.5541 -2.4350 27 1 6.4291 1.8844 -0.8433 28 1 6.0783 5.0644 0.5843 29 1 6.8213 3.4483 0.6482 30 1 9.6557 5.7494 1.1292 31 1 4.3946 3.6577 1.1572 32 1 3.2846 4.0541 -0.1845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -27.608420 kcal Electronic energy + Delta-G solvation = -12466.234044 eV Core-core repulsion = 10358.613563 eV Total energy + Delta-G solvation = -2107.620481 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95004 -35.45019 -33.69242 -30.75491 -29.72713 -29.00233 -26.40000 -24.30937 -21.79865 -21.21751 -18.61365 -17.42301 -16.98669 -16.20289 -15.93435 -15.29852 -15.03061 -14.58155 -14.37464 -14.31159 -14.07643 -13.64219 -13.13305 -12.99917 -12.92409 -12.55339 -12.34024 -11.99939 -11.82113 -11.80037 -11.59968 -11.24060 -10.85099 -10.62171 -9.03605 -8.65127 -8.21775 -6.32662 0.75031 1.40522 1.44207 1.52230 1.72022 2.40085 3.10493 3.36767 3.62487 3.66124 3.94593 4.28071 4.37309 4.39116 4.42611 4.45528 4.60014 4.71201 4.82174 4.91744 4.99388 5.01916 5.04960 5.13954 5.28327 5.34236 5.64250 6.02651 6.28935 6.57399 6.83275 7.37586 8.89356 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.088004 B = 0.005458 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.091911 B = 5128.808812 C = 5268.863573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.312 6.312 3 C -0.054 4.054 4 C -0.085 4.085 5 H 0.069 0.931 6 C -0.105 4.105 7 C 0.053 3.947 8 N -0.539 5.539 9 C 0.204 3.796 10 C -0.527 4.527 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.049 3.951 19 H 0.086 0.914 20 H 0.111 0.889 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.002 0.998 29 H -0.038 1.038 30 H 0.265 0.735 31 H 0.037 0.963 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -8.991 -2.524 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.087 6.087 3 C -0.202 4.202 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.143 4.143 7 C -0.075 4.075 8 N -0.263 5.263 9 C 0.077 3.923 10 C -0.565 4.565 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.796 3.204 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.080 4.080 19 H 0.105 0.895 20 H 0.129 0.871 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.020 0.980 29 H -0.020 1.020 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.615 -9.432 -2.768 17.613 hybrid contribution 0.465 0.922 0.587 1.188 sum -14.149 -8.510 -2.181 16.655 Atomic orbital electron populations 1.23421 0.91131 1.07420 1.05842 1.87114 1.10705 1.12653 1.98192 1.23274 0.97509 0.93479 1.05974 1.22041 0.93944 0.95939 0.98614 0.91271 1.22720 0.95542 0.99461 0.96584 1.22865 0.96698 0.88704 0.99185 1.63597 1.06710 1.25691 1.30342 1.19572 0.88080 0.92482 0.92129 1.21442 1.01209 1.40152 0.93735 0.92049 1.25952 1.00857 0.95820 0.97066 1.70081 1.27442 1.45890 1.14197 0.85404 0.77687 0.78864 0.78476 1.19187 1.20677 1.19229 1.22906 0.94525 0.95254 0.95362 0.89484 0.87059 0.89628 0.89010 0.88658 0.89555 0.90040 0.91311 0.96116 0.97981 1.02046 0.92615 0.94482 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.76 113.37 1.22 -0.28 16 2 S -0.31 -6.88 22.09 -56.49 -1.25 -8.13 16 3 C -0.05 -1.20 5.27 71.98 0.38 -0.82 16 4 C -0.08 -2.49 2.92 -9.61 -0.03 -2.52 16 5 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.11 -3.15 6.22 31.98 0.20 -2.95 16 7 C 0.05 2.13 6.14 86.77 0.53 2.66 16 8 N -0.54 -24.24 5.15 -890.13 -4.59 -28.82 16 9 C 0.20 11.32 4.33 85.56 0.37 11.69 16 10 C -0.53 -30.89 8.80 25.60 0.23 -30.67 16 11 H 0.06 3.52 7.76 -2.91 -0.02 3.50 16 12 C 0.00 0.06 5.46 84.66 0.46 0.52 16 13 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 14 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.05 1.77 6.46 86.65 0.56 2.33 16 19 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.09 1.92 8.00 -2.39 -0.02 1.90 16 24 H 0.09 2.35 7.94 -2.38 -0.02 2.33 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.02 0.91 7.62 -2.39 -0.02 0.89 16 28 H 0.00 0.12 8.03 -2.39 -0.02 0.11 16 29 H -0.04 -2.29 7.85 -2.39 -0.02 -2.31 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.04 1.42 7.55 -2.39 -0.02 1.40 16 32 H 0.09 2.71 7.82 -2.39 -0.02 2.69 16 Total: -1.00 -65.80 275.63 1.46 -64.34 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.06 Total: 2.83 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.92 Total: -20.04 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -4.30 Total: -86.07 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.25 Total: -8.13 kcal Total: -65.80 1.46 -64.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.731 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds