Wall clock time and date at job start Mon Mar 30 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47278 * 2 1 4 4 C 1.36931 * 119.99944 * 85.57316 * 3 2 1 5 5 H 1.08000 * 119.99963 * 209.87863 * 4 3 2 6 6 C 1.38812 * 120.00334 * 29.87253 * 4 3 2 7 7 N 1.31622 * 119.99791 * 40.65247 * 6 4 3 8 8 Si 1.86799 * 120.00424 * 220.65279 * 6 4 3 9 9 H 1.48501 * 109.47278 * 179.97438 * 8 6 4 10 10 H 1.48505 * 109.46977 * 59.99997 * 8 6 4 11 11 H 1.48492 * 109.47503 * 300.00406 * 8 6 4 12 12 C 1.46500 * 120.00302 * 265.56905 * 3 2 1 13 13 C 1.53002 * 109.47252 * 270.00364 * 12 3 2 14 14 H 1.09008 * 109.52180 * 304.99618 * 13 12 3 15 15 C 1.53141 * 109.52387 * 184.87072 * 13 12 3 16 16 O 1.43086 * 109.13991 * 184.85302 * 15 13 12 17 17 C 1.43083 * 113.65385 * 57.85020 * 16 15 13 18 18 C 1.53140 * 109.14358 * 302.08169 * 17 16 15 19 19 O 1.43071 * 109.52657 * 65.12752 * 13 12 3 20 20 H 1.08999 * 109.47200 * 60.00279 * 1 2 3 21 21 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47366 * 299.99813 * 1 2 3 23 23 H 1.09007 * 109.47014 * 240.00127 * 2 1 3 24 24 H 1.09005 * 109.47267 * 120.00608 * 2 1 3 25 25 H 0.97001 * 120.00003 * 5.83033 * 7 6 4 26 26 H 1.09005 * 109.46956 * 29.99796 * 12 3 2 27 27 H 1.08997 * 109.47472 * 149.99649 * 12 3 2 28 28 H 1.09006 * 109.52041 * 304.67944 * 15 13 12 29 29 H 1.08990 * 109.52837 * 64.87962 * 15 13 12 30 30 H 1.08995 * 109.52523 * 182.18179 * 17 16 15 31 31 H 1.08998 * 109.52151 * 61.97914 * 17 16 15 32 32 H 1.08998 * 109.52690 * 295.40621 * 18 17 16 33 33 H 1.09002 * 109.57696 * 175.24698 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1602 2.0572 1.1823 5 1 2.0419 3.1303 1.2083 6 6 2.4561 1.3631 2.3475 7 7 3.3249 0.3747 2.3221 8 14 1.6214 1.8319 3.9515 9 1 2.1057 0.9446 5.0394 10 1 0.1512 1.6803 3.8072 11 1 1.9432 3.2432 4.2831 12 6 2.3549 2.0392 -1.2649 13 6 3.8280 1.7887 -1.5939 14 1 4.4481 2.1123 -0.7578 15 6 4.2126 2.5749 -2.8505 16 8 5.5567 2.2474 -3.2158 17 6 5.7634 0.8514 -3.4524 18 6 5.3791 0.0667 -2.1947 19 8 4.0346 0.3929 -1.8303 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 3.8208 0.1856 1.5102 26 1 1.7309 1.6350 -2.0620 27 1 2.1799 3.1112 -1.1747 28 1 3.5396 2.3100 -3.6661 29 1 4.1389 3.6434 -2.6486 30 1 6.8128 0.6731 -3.6867 31 1 5.1424 0.5277 -4.2877 32 1 6.0522 0.3325 -1.3796 33 1 5.4533 -1.0023 -2.3944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:20 Heat of formation + Delta-G solvation = -73.311562 kcal Electronic energy + Delta-G solvation = -15526.304804 eV Core-core repulsion = 12973.949615 eV Total energy + Delta-G solvation = -2552.355189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46265 -36.27578 -35.27022 -32.21991 -31.07717 -29.29121 -27.65352 -25.25852 -23.54107 -22.62782 -20.69207 -19.99269 -17.22614 -16.39299 -16.06458 -15.61088 -14.92769 -14.77747 -13.90911 -13.85530 -13.56545 -13.03195 -12.80932 -12.14349 -12.03442 -11.59582 -11.13701 -10.88800 -10.82780 -10.64890 -10.51324 -10.31439 -10.00643 -9.96259 -9.76558 -9.41556 -8.68012 -8.16963 -6.81270 -6.10066 -3.15323 3.52140 3.57926 3.74860 3.96871 4.22003 4.63796 4.92871 5.20576 5.23012 5.30004 5.37631 5.51444 5.71294 5.75016 5.79923 5.98686 6.13238 6.21688 6.29233 6.49525 6.53986 6.61826 6.76472 6.88348 7.21350 7.22663 7.47655 7.68411 8.15482 8.61530 9.17658 9.90165 10.38655 11.12611 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.038391 B = 0.009264 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.163230 B = 3021.865559 C = 3179.026274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.374 4.374 5 H 0.052 0.948 6 C -0.008 4.008 7 N -0.881 5.881 8 Si 1.043 2.957 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.293 1.293 12 C 0.158 3.842 13 C 0.035 3.965 14 H 0.067 0.933 15 C 0.030 3.970 16 O -0.387 6.387 17 C 0.027 3.973 18 C 0.024 3.976 19 O -0.362 6.362 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.272 0.728 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 0.357 -9.583 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.502 4.502 5 H 0.070 0.930 6 C -0.214 4.214 7 N -0.517 5.517 8 Si 0.872 3.128 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.220 1.220 12 C 0.030 3.970 13 C -0.026 4.026 14 H 0.085 0.915 15 C -0.047 4.047 16 O -0.306 6.306 17 C -0.050 4.050 18 C -0.053 4.053 19 O -0.281 6.281 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.282 -0.059 -7.955 8.058 hybrid contribution 0.306 0.469 -1.636 1.729 sum 1.588 0.410 -9.591 9.730 Atomic orbital electron populations 1.22211 1.00155 0.98728 1.00794 1.20813 0.91060 0.86270 1.00470 1.43932 1.73110 1.12019 1.01232 1.19694 1.50835 0.93195 0.86500 0.93045 1.25630 0.96410 0.98403 1.00934 1.70759 1.17237 1.33845 1.29851 0.83870 0.76744 0.75521 0.76631 1.21317 1.22030 1.21953 1.20931 0.89136 0.97183 0.89740 1.23872 1.02700 0.81066 0.95001 0.91455 1.23357 0.83216 1.00825 0.97351 1.88016 1.29284 1.23669 1.89635 1.23194 1.01808 0.82558 0.97447 1.23096 0.86318 0.99847 0.96089 1.88150 1.26043 1.24702 1.89162 0.94641 0.94702 0.92870 0.94462 0.91594 0.91740 0.93882 0.92113 0.92874 0.88319 0.88602 0.92767 0.92658 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.22 37.15 0.38 -3.00 16 2 C 0.14 3.37 5.68 -4.05 -0.02 3.35 16 3 N -0.58 -14.58 2.32 -173.24 -0.40 -14.98 16 4 C -0.37 -10.38 9.26 -15.06 -0.14 -10.52 16 5 H 0.05 1.46 8.06 -52.49 -0.42 1.03 16 6 C -0.01 -0.22 4.51 -17.43 -0.08 -0.30 16 7 N -0.88 -26.29 12.22 55.49 0.68 -25.61 16 8 Si 1.04 25.25 30.06 -169.99 -5.11 20.14 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.16 3.33 5.34 -4.04 -0.02 3.30 16 13 C 0.03 0.69 3.08 -26.66 -0.08 0.61 16 14 H 0.07 1.56 8.14 -51.92 -0.42 1.14 16 15 C 0.03 0.49 6.34 37.23 0.24 0.73 16 16 O -0.39 -6.50 10.84 -48.81 -0.53 -7.02 16 17 C 0.03 0.38 7.05 37.23 0.26 0.64 16 18 C 0.02 0.39 7.05 37.23 0.26 0.65 16 19 O -0.36 -7.33 9.41 -48.81 -0.46 -7.78 16 20 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.04 0.86 7.21 -51.93 -0.37 0.49 16 24 H 0.07 1.79 5.71 -51.93 -0.30 1.50 16 25 H 0.27 8.32 8.12 -40.82 -0.33 7.99 16 26 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.06 1.22 8.04 -51.93 -0.42 0.81 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -30.62 271.33 -6.22 -36.84 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.29 Total: -1.13 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 0.80 Total: -4.54 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.28 Total: -40.59 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.99 Total: -14.81 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.11 Total: 20.14 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.62 -6.22 -36.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.467 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds