Wall clock time and date at job start Mon Mar 30 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47278 * 2 1 4 4 C 1.36931 * 119.99944 * 85.57316 * 3 2 1 5 5 H 1.08000 * 119.99963 * 209.87863 * 4 3 2 6 6 C 1.38812 * 120.00334 * 29.87253 * 4 3 2 7 7 N 1.31622 * 119.99791 * 40.65247 * 6 4 3 8 8 Si 1.86799 * 120.00424 * 220.65279 * 6 4 3 9 9 H 1.48501 * 109.47278 * 179.97438 * 8 6 4 10 10 H 1.48505 * 109.46977 * 59.99997 * 8 6 4 11 11 H 1.48492 * 109.47503 * 300.00406 * 8 6 4 12 12 C 1.46500 * 120.00302 * 265.56905 * 3 2 1 13 13 C 1.53002 * 109.47252 * 270.00364 * 12 3 2 14 14 H 1.09008 * 109.52180 * 304.99618 * 13 12 3 15 15 C 1.53141 * 109.52387 * 184.87072 * 13 12 3 16 16 O 1.43086 * 109.13991 * 184.85302 * 15 13 12 17 17 C 1.43083 * 113.65385 * 57.85020 * 16 15 13 18 18 C 1.53140 * 109.14358 * 302.08169 * 17 16 15 19 19 O 1.43071 * 109.52657 * 65.12752 * 13 12 3 20 20 H 1.08999 * 109.47200 * 60.00279 * 1 2 3 21 21 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47366 * 299.99813 * 1 2 3 23 23 H 1.09007 * 109.47014 * 240.00127 * 2 1 3 24 24 H 1.09005 * 109.47267 * 120.00608 * 2 1 3 25 25 H 0.97001 * 120.00003 * 5.83033 * 7 6 4 26 26 H 1.09005 * 109.46956 * 29.99796 * 12 3 2 27 27 H 1.08997 * 109.47472 * 149.99649 * 12 3 2 28 28 H 1.09006 * 109.52041 * 304.67944 * 15 13 12 29 29 H 1.08990 * 109.52837 * 64.87962 * 15 13 12 30 30 H 1.08995 * 109.52523 * 182.18179 * 17 16 15 31 31 H 1.08998 * 109.52151 * 61.97914 * 17 16 15 32 32 H 1.08998 * 109.52690 * 295.40621 * 18 17 16 33 33 H 1.09002 * 109.57696 * 175.24698 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1602 2.0572 1.1823 5 1 2.0419 3.1303 1.2083 6 6 2.4561 1.3631 2.3475 7 7 3.3249 0.3747 2.3221 8 14 1.6214 1.8319 3.9515 9 1 2.1057 0.9446 5.0394 10 1 0.1512 1.6803 3.8072 11 1 1.9432 3.2432 4.2831 12 6 2.3549 2.0392 -1.2649 13 6 3.8280 1.7887 -1.5939 14 1 4.4481 2.1123 -0.7578 15 6 4.2126 2.5749 -2.8505 16 8 5.5567 2.2474 -3.2158 17 6 5.7634 0.8514 -3.4524 18 6 5.3791 0.0667 -2.1947 19 8 4.0346 0.3929 -1.8303 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 3.8208 0.1856 1.5102 26 1 1.7309 1.6350 -2.0620 27 1 2.1799 3.1112 -1.1747 28 1 3.5396 2.3100 -3.6661 29 1 4.1389 3.6434 -2.6486 30 1 6.8128 0.6731 -3.6867 31 1 5.1424 0.5277 -4.2877 32 1 6.0522 0.3325 -1.3796 33 1 5.4533 -1.0023 -2.3944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:20 Heat of formation + Delta-G solvation = -93.471419 kcal Electronic energy + Delta-G solvation = -15527.179001 eV Core-core repulsion = 12973.949615 eV Total energy + Delta-G solvation = -2553.229386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85603 -38.05444 -36.79512 -33.96800 -32.92197 -30.91300 -29.18810 -26.94240 -25.35514 -24.16261 -22.22790 -21.81554 -19.22330 -17.78104 -17.49998 -17.04562 -16.43831 -16.18624 -15.85309 -15.53775 -15.46962 -14.71937 -14.34136 -13.92133 -13.45502 -12.96132 -12.88444 -12.62583 -12.52645 -12.36497 -12.31611 -11.92475 -11.82157 -11.62088 -11.44039 -11.27308 -10.29307 -10.10311 -8.87669 -8.26688 -5.31371 1.57501 1.63678 1.83481 2.64955 2.75853 2.80164 3.11389 3.44331 3.81093 4.02554 4.11237 4.14497 4.20049 4.45122 4.47125 4.52931 4.55590 4.70160 4.73596 4.83732 4.86467 4.96367 5.05210 5.13322 5.37039 5.59571 5.96068 5.99472 6.21239 6.37467 7.11529 7.84143 8.30507 8.90358 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.038391 B = 0.009264 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.163230 B = 3021.865559 C = 3179.026274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 N -0.598 5.598 4 C -0.374 4.374 5 H 0.043 0.957 6 C -0.057 4.057 7 N -0.907 5.907 8 Si 1.092 2.908 9 H -0.294 1.294 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.154 3.846 13 C 0.043 3.957 14 H 0.021 0.979 15 C 0.040 3.960 16 O -0.402 6.402 17 C 0.030 3.970 18 C 0.017 3.983 19 O -0.387 6.387 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.030 0.970 25 H 0.254 0.746 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 0.667 -11.020 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 N -0.319 5.319 4 C -0.503 4.503 5 H 0.060 0.940 6 C -0.258 4.258 7 N -0.545 5.545 8 Si 0.917 3.083 9 H -0.220 1.220 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.028 3.972 13 C -0.018 4.018 14 H 0.039 0.961 15 C -0.037 4.037 16 O -0.321 6.321 17 C -0.047 4.047 18 C -0.060 4.060 19 O -0.306 6.306 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.609 0.266 -9.426 9.450 hybrid contribution 0.560 0.335 -1.276 1.433 sum 1.169 0.601 -10.702 10.783 Atomic orbital electron populations 1.22061 0.97625 1.00371 1.00631 1.20743 0.92966 0.85648 0.98959 1.44118 1.73727 1.12278 1.01780 1.19836 1.49513 0.93036 0.87911 0.93953 1.26844 0.96473 0.98447 1.03989 1.70892 1.18982 1.35758 1.28866 0.83193 0.76194 0.75869 0.73020 1.22009 1.20770 1.20202 1.21060 0.90205 0.97374 0.88602 1.23556 1.00872 0.81834 0.95515 0.96079 1.23263 0.83656 1.00943 0.95854 1.88003 1.29332 1.25262 1.89468 1.23367 1.04064 0.80823 0.96417 1.23352 0.84171 1.01830 0.96663 1.88087 1.28306 1.24736 1.89505 0.92919 0.92195 0.94747 0.93918 0.95163 0.93725 0.91897 0.91439 0.90696 0.86951 0.85590 0.90922 0.94703 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.03 10.22 71.98 0.74 -5.29 16 2 C 0.14 6.87 5.68 86.38 0.49 7.37 16 3 N -0.60 -30.03 2.32 -702.01 -1.63 -31.66 16 4 C -0.37 -21.00 9.26 84.03 0.78 -20.22 16 5 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 6 C -0.06 -3.26 4.51 84.86 0.38 -2.88 16 7 N -0.91 -55.80 12.22 21.65 0.26 -55.53 16 8 Si 1.09 51.41 30.06 68.60 2.06 53.47 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.15 6.37 5.34 86.38 0.46 6.84 16 13 C 0.04 1.71 3.08 30.64 0.09 1.80 16 14 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 15 C 0.04 1.23 6.34 72.03 0.46 1.69 16 16 O -0.40 -12.63 10.84 -136.00 -1.47 -14.10 16 17 C 0.03 0.76 7.05 72.03 0.51 1.27 16 18 C 0.02 0.53 7.05 72.03 0.51 1.04 16 19 O -0.39 -15.55 9.41 -136.00 -1.28 -16.83 16 20 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.04 1.97 7.21 -2.38 -0.02 1.95 16 24 H 0.03 1.68 5.71 -2.38 -0.01 1.67 16 25 H 0.25 16.21 8.12 -92.71 -0.75 15.46 16 26 H 0.06 2.34 8.07 -2.38 -0.02 2.32 16 27 H 0.07 2.66 8.04 -2.39 -0.02 2.64 16 28 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 3.10 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -66.82 271.33 3.44 -63.39 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.08 Total: 9.67 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.42 Total: -8.39 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -1.37 Total: -87.20 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -2.75 Total: -30.94 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.47 kcal Total: -66.82 3.44 -63.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.083 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds