Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 O 1.42893 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.42894 * 114.00213 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.52537 * 330.00213 * 12 11 10 14 14 C 1.53098 * 109.51929 * 90.12710 * 12 11 10 15 15 O 1.43037 * 109.34478 * 62.36301 * 14 12 11 16 16 C 1.42898 * 114.13196 * 61.11589 * 15 14 12 17 17 C 1.53086 * 109.41906 * 298.84135 * 16 15 14 18 18 C 1.53178 * 109.16656 * 57.60819 * 17 16 15 19 19 H 1.09006 * 109.61152 * 62.92868 * 18 17 16 20 20 N 1.46895 * 109.54632 * 183.15531 * 18 17 16 21 21 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 23 23 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 24 24 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 25 25 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 26 26 H 1.09010 * 109.47833 * 182.28159 * 14 12 11 27 27 H 1.08998 * 109.48118 * 302.30992 * 14 12 11 28 28 H 1.09007 * 109.47492 * 178.85900 * 16 15 14 29 29 H 1.09000 * 109.48024 * 58.82664 * 16 15 14 30 30 H 1.09002 * 109.52145 * 297.70590 * 17 16 15 31 31 H 1.08998 * 109.57652 * 177.55212 * 17 16 15 32 32 H 1.00900 * 111.00212 * 299.55503 * 20 18 17 33 33 H 1.00896 * 111.00102 * 63.51185 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 8 5.4506 -2.6364 -0.0009 12 6 6.0319 -3.9418 -0.0002 13 1 5.3673 -4.6362 0.5137 14 6 6.2429 -4.4086 -1.4430 15 8 7.1609 -3.5276 -2.0965 16 6 8.4567 -3.4836 -1.4958 17 6 8.3332 -2.9804 -0.0553 18 6 7.3837 -3.8999 0.7189 19 1 7.8037 -4.9047 0.7645 20 7 7.1998 -3.3817 2.0811 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6800 -0.8911 23 1 3.8753 -0.6803 0.8889 24 1 3.6586 -3.1501 0.8892 25 1 3.6580 -3.1504 -0.8907 26 1 6.6486 -5.4204 -1.4420 27 1 5.2894 -4.3997 -1.9711 28 1 9.0975 -2.8085 -2.0630 29 1 8.8914 -4.4832 -1.4956 30 1 7.9363 -1.9652 -0.0569 31 1 9.3144 -2.9871 0.4193 32 1 8.0785 -3.3448 2.5756 33 1 6.7547 -2.4764 2.0665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = -103.417187 kcal Electronic energy + Delta-G solvation = -15012.121952 eV Core-core repulsion = 12458.461285 eV Total energy + Delta-G solvation = -2553.660666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72663 -36.77078 -34.97770 -33.08412 -30.85547 -30.22118 -29.19877 -24.80238 -23.66016 -23.30555 -20.58747 -20.02807 -17.00382 -16.48587 -16.27229 -15.99373 -15.43834 -15.08307 -14.24345 -14.13504 -13.83710 -13.62341 -12.80273 -12.75788 -12.51470 -11.98705 -11.53074 -11.27048 -11.21191 -10.78829 -10.60937 -10.31799 -9.96088 -9.85796 -9.67028 -9.23182 -8.76135 -8.64259 -8.53174 -6.05755 -4.04920 3.33330 3.40260 3.47306 3.83899 4.24180 4.46232 4.47441 4.75447 4.77812 4.93291 5.11735 5.27223 5.29011 5.41967 5.49339 5.61428 5.68728 5.77046 5.93888 6.18267 6.19833 6.26071 6.70772 7.08316 7.13171 7.24774 7.41057 7.49056 7.71061 7.93055 8.49448 8.96662 9.55917 11.07228 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.007023 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.817959 B = 3985.880457 C = 4024.232893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.007 4.007 10 C 0.077 3.923 11 O -0.376 6.376 12 C 0.060 3.940 13 H 0.073 0.927 14 C 0.040 3.960 15 O -0.370 6.370 16 C 0.065 3.935 17 C -0.187 4.187 18 C 0.096 3.904 19 H 0.084 0.916 20 N -0.841 5.841 21 H 0.264 0.736 22 H 0.024 0.976 23 H 0.018 0.982 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.336 0.664 33 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.265 -7.987 -0.046 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.213 1.213 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.044 4.044 10 C 0.001 3.999 11 O -0.295 6.295 12 C 0.001 3.999 13 H 0.091 0.909 14 C -0.037 4.037 15 O -0.288 6.288 16 C -0.012 4.012 17 C -0.227 4.227 18 C -0.016 4.016 19 H 0.102 0.898 20 N -0.370 5.370 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.674 -8.225 -0.080 18.592 hybrid contribution 0.861 1.256 -0.033 1.523 sum 17.535 -6.969 -0.113 18.869 Atomic orbital electron populations 1.69906 1.06283 1.27027 1.50826 1.24954 0.94736 0.99181 0.94313 0.86749 0.80491 0.83351 0.78596 1.20222 1.18776 1.21336 1.20944 0.88861 0.94718 1.51544 0.90959 1.19508 0.96490 0.91128 0.97317 1.22683 0.77543 1.00757 0.98882 1.87899 1.21948 1.24929 1.94734 1.22659 0.94681 0.87884 0.94695 0.90940 1.23170 0.94392 0.92245 0.93908 1.88013 1.21741 1.65734 1.53315 1.22462 0.85489 1.00000 0.93290 1.23008 1.00060 1.02389 0.97258 1.21533 0.93805 0.98055 0.88206 0.89777 1.58840 1.28662 1.34662 1.14846 0.92618 0.95805 0.96338 0.93979 0.94252 0.92797 0.88247 0.89187 0.93664 0.89951 0.91551 0.85208 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.17 4.41 -27.88 -0.12 -0.30 16 10 C 0.08 1.63 5.69 37.16 0.21 1.84 16 11 O -0.38 -7.07 8.64 -42.72 -0.37 -7.44 16 12 C 0.06 0.89 2.63 -26.59 -0.07 0.82 16 13 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 14 C 0.04 0.55 6.50 37.21 0.24 0.79 16 15 O -0.37 -5.61 10.70 -42.72 -0.46 -6.07 16 16 C 0.07 0.75 6.84 37.20 0.25 1.01 16 17 C -0.19 -2.17 5.56 -26.60 -0.15 -2.32 16 18 C 0.10 1.18 3.17 -67.53 -0.21 0.97 16 19 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 20 N -0.84 -10.45 9.26 -4.51 -0.04 -10.49 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 23 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 24 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 25 H 0.04 0.82 7.85 -51.93 -0.41 0.41 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.10 1.40 7.85 -51.93 -0.41 1.00 16 28 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.16 7.83 -51.93 -0.41 0.76 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 3.30 9.04 -39.29 -0.36 2.94 16 33 H 0.35 4.98 8.29 -39.29 -0.33 4.65 16 LS Contribution 269.21 15.07 4.06 4.06 Total: -1.00 -31.89 269.21 -6.18 -38.06 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.19 Total: 2.36 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.28 Total: -10.76 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.73 Total: -37.77 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.83 Total: -13.50 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.89 -6.18 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.355 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds