Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 O 1.42893 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.42894 * 114.00213 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.52537 * 330.00213 * 12 11 10 14 14 C 1.53098 * 109.51929 * 90.12710 * 12 11 10 15 15 O 1.43037 * 109.34478 * 62.36301 * 14 12 11 16 16 C 1.42898 * 114.13196 * 61.11589 * 15 14 12 17 17 C 1.53086 * 109.41906 * 298.84135 * 16 15 14 18 18 C 1.53178 * 109.16656 * 57.60819 * 17 16 15 19 19 H 1.09006 * 109.61152 * 62.92868 * 18 17 16 20 20 N 1.46895 * 109.54632 * 183.15531 * 18 17 16 21 21 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 23 23 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 24 24 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 25 25 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 26 26 H 1.09010 * 109.47833 * 182.28159 * 14 12 11 27 27 H 1.08998 * 109.48118 * 302.30992 * 14 12 11 28 28 H 1.09007 * 109.47492 * 178.85900 * 16 15 14 29 29 H 1.09000 * 109.48024 * 58.82664 * 16 15 14 30 30 H 1.09002 * 109.52145 * 297.70590 * 17 16 15 31 31 H 1.08998 * 109.57652 * 177.55212 * 17 16 15 32 32 H 1.00900 * 111.00212 * 299.55503 * 20 18 17 33 33 H 1.00896 * 111.00102 * 63.51185 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 8 5.4506 -2.6364 -0.0009 12 6 6.0319 -3.9418 -0.0002 13 1 5.3673 -4.6362 0.5137 14 6 6.2429 -4.4086 -1.4430 15 8 7.1609 -3.5276 -2.0965 16 6 8.4567 -3.4836 -1.4958 17 6 8.3332 -2.9804 -0.0553 18 6 7.3837 -3.8999 0.7189 19 1 7.8037 -4.9047 0.7645 20 7 7.1998 -3.3817 2.0811 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6800 -0.8911 23 1 3.8753 -0.6803 0.8889 24 1 3.6586 -3.1501 0.8892 25 1 3.6580 -3.1504 -0.8907 26 1 6.6486 -5.4204 -1.4420 27 1 5.2894 -4.3997 -1.9711 28 1 9.0975 -2.8085 -2.0630 29 1 8.8914 -4.4832 -1.4956 30 1 7.9363 -1.9652 -0.0569 31 1 9.3144 -2.9871 0.4193 32 1 8.0785 -3.3448 2.5756 33 1 6.7547 -2.4764 2.0665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686578872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = -128.194418 kcal Electronic energy + Delta-G solvation = -15013.196373 eV Core-core repulsion = 12458.461285 eV Total energy + Delta-G solvation = -2554.735088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82141 -38.13435 -36.07834 -35.17187 -32.60567 -31.34026 -30.44048 -26.73272 -24.69771 -24.31800 -22.55973 -21.10480 -19.07291 -17.58209 -17.45544 -17.21285 -16.62489 -16.40865 -16.05706 -15.60758 -15.16669 -14.78374 -14.56518 -14.00753 -13.78389 -13.40496 -13.13969 -12.83150 -12.46896 -12.24485 -12.04664 -11.76780 -11.70750 -11.57260 -11.41449 -10.96305 -10.79656 -10.07348 -9.58318 -8.33970 -6.39474 1.34422 1.36482 1.49849 2.33790 2.70299 3.01185 3.06216 3.51684 3.75130 3.84113 3.96355 4.18437 4.32620 4.37634 4.43591 4.46034 4.56064 4.68855 4.73169 4.83353 4.86898 5.01620 5.13649 5.28280 5.41542 5.56610 6.14714 6.17762 6.22323 6.46340 6.59369 6.66588 7.25648 8.82246 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.007023 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.817959 B = 3985.880457 C = 4024.232893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.254 1.254 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.038 0.962 9 C -0.002 4.002 10 C 0.092 3.908 11 O -0.386 6.386 12 C 0.049 3.951 13 H 0.072 0.928 14 C 0.041 3.959 15 O -0.401 6.401 16 C 0.058 3.942 17 C -0.181 4.181 18 C 0.099 3.901 19 H 0.110 0.890 20 N -0.848 5.848 21 H 0.269 0.731 22 H 0.018 0.982 23 H 0.022 0.978 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.351 0.649 33 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.785 -8.090 0.171 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.178 1.178 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.056 0.944 9 C -0.040 4.040 10 C 0.016 3.984 11 O -0.305 6.305 12 C -0.009 4.009 13 H 0.090 0.910 14 C -0.037 4.037 15 O -0.320 6.320 16 C -0.019 4.019 17 C -0.220 4.220 18 C -0.013 4.013 19 H 0.128 0.872 20 N -0.378 5.378 21 H 0.078 0.922 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 19.225 -8.354 0.145 20.962 hybrid contribution 0.090 1.179 -0.097 1.187 sum 19.315 -7.174 0.048 20.604 Atomic orbital electron populations 1.70039 1.08103 1.28397 1.51976 1.25907 0.95625 1.03328 0.93762 0.85649 0.79273 0.78314 0.79370 1.18832 1.17807 1.20452 1.21229 0.91085 0.93646 1.51415 0.94375 1.19360 0.93872 0.93778 0.96951 1.22258 0.79347 0.98079 0.98746 1.87854 1.19973 1.27769 1.94926 1.23011 0.95853 0.85920 0.96160 0.90979 1.23182 0.94186 0.93715 0.92599 1.87970 1.23339 1.66389 1.54271 1.22711 0.84201 1.01906 0.93039 1.22944 1.01079 1.00360 0.97653 1.21598 0.92313 0.99568 0.87827 0.87184 1.58842 1.29750 1.33935 1.15234 0.92189 0.96403 0.95972 0.94109 0.94474 0.89392 0.89642 0.88242 0.90889 0.92979 0.88701 0.83481 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.01 0.68 5.47 84.65 0.46 1.15 16 3 Si 0.95 45.69 27.47 68.60 1.88 47.57 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.54 -31.87 9.66 25.60 0.25 -31.62 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 9 C 0.00 -0.11 4.41 29.85 0.13 0.03 16 10 C 0.09 3.91 5.69 71.98 0.41 4.32 16 11 O -0.39 -14.27 8.64 -141.82 -1.23 -15.50 16 12 C 0.05 1.38 2.63 30.69 0.08 1.46 16 13 H 0.07 2.02 7.79 -2.39 -0.02 2.00 16 14 C 0.04 1.04 6.50 72.01 0.47 1.50 16 15 O -0.40 -11.46 10.70 -141.82 -1.52 -12.97 16 16 C 0.06 1.17 6.84 72.01 0.49 1.67 16 17 C -0.18 -3.69 5.56 30.68 0.17 -3.52 16 18 C 0.10 2.15 3.17 45.04 0.14 2.30 16 19 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 20 N -0.85 -19.27 9.26 -168.18 -1.56 -20.83 16 21 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 22 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 23 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 24 H 0.04 1.72 8.09 -2.39 -0.02 1.70 16 25 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 26 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 2.37 7.85 -2.39 -0.02 2.36 16 28 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.39 7.83 -2.39 -0.02 1.37 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.35 5.97 9.04 -89.69 -0.81 5.16 16 33 H 0.34 9.22 8.29 -89.70 -0.74 8.48 16 Total: -1.00 -69.00 269.21 -0.02 -69.02 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.51 Total: 14.98 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 2.61 Total: -22.72 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.26 Total: -80.37 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -2.74 Total: -28.47 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -69.00 -0.02 -69.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.177 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds