Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99853 * 2 1 4 4 H 1.48503 * 109.46626 * 269.99737 * 3 2 1 5 5 H 1.48494 * 109.47038 * 29.99658 * 3 2 1 6 6 H 1.48502 * 109.46946 * 149.99999 * 3 2 1 7 7 C 1.37879 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99782 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00253 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47112 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.42891 * 114.00262 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.52386 * 329.87451 * 12 11 10 14 14 C 1.53093 * 109.52064 * 90.00147 * 12 11 10 15 15 O 1.42905 * 109.41479 * 177.51759 * 14 12 11 16 16 C 1.42905 * 114.09321 * 298.83564 * 15 14 12 17 17 C 1.53096 * 109.41404 * 61.16204 * 16 15 14 18 18 C 1.53180 * 109.16300 * 302.38785 * 17 16 15 19 19 H 1.09000 * 109.61784 * 297.07490 * 18 17 16 20 20 N 1.46892 * 109.54264 * 176.84789 * 18 17 16 21 21 H 0.96995 * 120.00060 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47010 * 59.99750 * 9 7 2 23 23 H 1.09008 * 109.46667 * 299.99761 * 9 7 2 24 24 H 1.08994 * 109.47779 * 59.99740 * 10 9 7 25 25 H 1.09008 * 109.46768 * 299.99219 * 10 9 7 26 26 H 1.09000 * 109.48469 * 57.53071 * 14 12 11 27 27 H 1.09008 * 109.47818 * 297.49046 * 14 12 11 28 28 H 1.09005 * 109.48139 * 181.14239 * 16 15 14 29 29 H 1.09001 * 109.48271 * 301.17775 * 16 15 14 30 30 H 1.09001 * 109.52258 * 62.29544 * 17 16 15 31 31 H 1.09004 * 109.52122 * 182.48273 * 17 16 15 32 32 H 1.00901 * 111.00233 * 60.44757 * 20 18 17 33 33 H 1.00903 * 111.00039 * 184.40143 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 8 5.4506 -2.6365 0.0021 12 6 6.0318 -3.9419 0.0027 13 1 5.3679 -4.6360 0.5178 14 6 6.2411 -4.4093 -1.4400 15 8 6.8752 -5.6899 -1.4372 16 6 8.1653 -5.7008 -0.8226 17 6 8.0334 -5.2852 0.6449 18 6 7.3853 -3.8992 0.7188 19 1 8.0312 -3.1669 0.2343 20 7 7.1857 -3.5244 2.1250 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6799 0.8911 23 1 3.8752 -0.6803 -0.8889 24 1 3.6587 -3.1502 -0.8891 25 1 3.6580 -3.1504 0.8909 26 1 6.8715 -3.6927 -1.9665 27 1 5.2762 -4.4826 -1.9419 28 1 8.5868 -6.7044 -0.8797 29 1 8.8209 -5.0010 -1.3411 30 1 7.4108 -6.0071 1.1734 31 1 9.0215 -5.2502 1.1038 32 1 8.0652 -3.4896 2.6183 33 1 6.6947 -2.6460 2.1989 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -105.558504 kcal Electronic energy + Delta-G solvation = -14783.734923 eV Core-core repulsion = 12229.981403 eV Total energy + Delta-G solvation = -2553.753521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.71932 -37.12507 -34.96462 -33.15360 -30.94612 -30.38962 -29.14709 -24.90321 -23.78311 -23.06991 -20.80902 -19.97738 -17.19681 -16.53422 -16.39014 -15.75041 -15.57947 -15.26718 -14.30182 -14.22560 -14.09282 -13.55329 -12.92599 -12.86797 -12.44040 -12.05151 -11.73731 -11.29148 -11.14959 -11.00872 -10.57762 -10.31985 -9.98781 -9.86259 -9.77783 -9.27951 -8.92649 -8.69030 -8.57146 -6.08939 -4.08665 3.30164 3.37240 3.42699 3.64789 4.15533 4.39125 4.42480 4.61481 4.85642 4.97409 5.11256 5.17416 5.25389 5.40286 5.50611 5.54207 5.64662 5.84427 5.93731 6.05460 6.13816 6.21717 6.63228 6.96132 7.10961 7.14270 7.34055 7.46115 7.65172 7.84242 8.45820 8.93502 9.52202 11.04013 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.050832 B = 0.006254 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.705325 B = 4475.893160 C = 4706.199764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.008 4.008 10 C 0.076 3.924 11 O -0.386 6.386 12 C 0.062 3.938 13 H 0.074 0.926 14 C 0.040 3.960 15 O -0.378 6.378 16 C 0.059 3.941 17 C -0.147 4.147 18 C 0.094 3.906 19 H 0.041 0.959 20 N -0.843 5.843 21 H 0.265 0.735 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.336 0.664 33 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.214 -8.367 0.208 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.045 4.045 10 C 0.001 3.999 11 O -0.306 6.306 12 C 0.003 3.997 13 H 0.092 0.908 14 C -0.037 4.037 15 O -0.297 6.297 16 C -0.018 4.018 17 C -0.186 4.186 18 C -0.018 4.018 19 H 0.059 0.941 20 N -0.374 5.374 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.629 -8.898 0.183 18.861 hybrid contribution 0.850 1.787 -0.103 1.982 sum 17.480 -7.111 0.080 18.871 Atomic orbital electron populations 1.69900 1.06287 1.27079 1.50629 1.24954 0.94734 0.99166 0.94280 0.86749 0.80405 0.83378 0.78628 1.20196 1.21283 1.18864 1.20933 0.88766 0.94795 1.51739 0.90873 1.19532 0.96650 0.91016 0.97348 1.22733 0.77055 1.00817 0.99318 1.87863 1.22571 1.25324 1.94845 1.22658 0.94779 0.87184 0.95082 0.90756 1.23142 0.98820 0.84879 0.96871 1.87949 1.31755 1.30677 1.79312 1.22602 0.85347 1.02062 0.91821 1.22275 1.01482 0.97048 0.97760 1.21400 0.95088 0.95814 0.89494 0.94119 1.58671 1.26405 1.40541 1.11821 0.92560 0.95792 0.96309 0.94022 0.93638 0.92455 0.88147 0.88592 0.93204 0.89959 0.90770 0.85162 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.20 4.41 -27.89 -0.12 -0.32 16 10 C 0.08 1.59 5.69 37.15 0.21 1.80 16 11 O -0.39 -7.16 9.46 -35.23 -0.33 -7.50 16 12 C 0.06 0.95 2.45 -26.59 -0.07 0.89 16 13 H 0.07 1.22 7.79 -51.93 -0.40 0.81 16 14 C 0.04 0.57 6.46 37.21 0.24 0.81 16 15 O -0.38 -5.11 10.77 -35.23 -0.38 -5.49 16 16 C 0.06 0.60 6.84 37.21 0.25 0.86 16 17 C -0.15 -1.53 5.72 -26.59 -0.15 -1.68 16 18 C 0.09 1.20 3.05 -67.53 -0.21 0.99 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 20 N -0.84 -10.58 9.25 -4.51 -0.04 -10.63 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 23 H 0.02 0.46 7.57 -51.92 -0.39 0.07 16 24 H 0.04 0.85 7.94 -51.93 -0.41 0.43 16 25 H 0.05 0.95 8.09 -51.92 -0.42 0.53 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.43 7.94 -51.92 -0.41 1.02 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 3.33 9.04 -39.29 -0.36 2.97 16 33 H 0.35 4.90 8.50 -39.29 -0.33 4.57 16 LS Contribution 270.62 15.07 4.08 4.08 Total: -1.00 -31.03 270.62 -6.07 -37.10 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.23 Total: 2.34 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.27 Total: -10.10 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.73 Total: -37.63 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.71 Total: -12.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.03 -6.07 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.460 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds