Wall clock time and date at job start Mon Mar 30 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46908 * 109.46923 * 2 1 4 4 C 1.46899 * 110.99798 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.54613 * 34.81950 * 4 3 2 6 6 C 1.53181 * 109.53983 * 274.55537 * 4 3 2 7 7 C 1.53093 * 109.16218 * 183.15544 * 6 4 3 8 8 O 1.42905 * 109.41329 * 57.60476 * 7 6 4 9 9 C 1.43030 * 114.13728 * 298.83738 * 8 7 6 10 10 C 1.53098 * 109.34035 * 61.12221 * 9 8 7 11 11 H 1.09002 * 109.52244 * 62.36069 * 10 9 8 12 12 O 1.42901 * 109.52502 * 182.48561 * 10 9 8 13 13 C 1.34920 * 117.00160 * 269.87682 * 12 10 9 14 14 H 1.08010 * 119.99778 * 359.97438 * 13 12 10 15 15 C 1.38638 * 120.00244 * 179.97438 * 13 12 10 16 16 N 1.31580 * 119.99803 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99848 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47050 * 60.00096 * 17 15 13 19 19 H 1.48506 * 109.46770 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.47417 * 299.99846 * 17 15 13 21 21 H 1.08997 * 109.46697 * 60.00281 * 1 2 3 22 22 H 1.08997 * 109.46533 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47165 * 300.00607 * 1 2 3 24 24 H 1.09000 * 109.47576 * 239.99726 * 2 1 3 25 25 H 1.08996 * 109.47175 * 119.99508 * 2 1 3 26 26 H 1.00894 * 110.99882 * 56.04149 * 3 2 1 27 27 H 1.09005 * 109.52357 * 303.05518 * 6 4 3 28 28 H 1.08991 * 109.52488 * 63.24646 * 6 4 3 29 29 H 1.09000 * 109.48150 * 177.58678 * 7 6 4 30 30 H 1.09002 * 109.47828 * 297.62549 * 7 6 4 31 31 H 1.08999 * 109.46933 * 301.19433 * 9 8 7 32 32 H 1.09000 * 109.57180 * 181.11227 * 9 8 7 33 33 H 0.97002 * 119.99902 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4882 1.4243 0.0006 5 1 3.8755 0.5909 -0.5856 6 6 4.0028 1.3235 1.4399 7 6 5.5289 1.4444 1.4375 8 8 5.9065 2.6811 0.8290 9 6 5.4934 2.8125 -0.5340 10 6 3.9657 2.7457 -0.6094 11 1 3.5368 3.5795 -0.0537 12 8 3.5514 2.8184 -1.9751 13 6 3.3149 4.0476 -2.4788 14 1 3.4407 4.9202 -1.8549 15 6 2.9104 4.1904 -3.7972 16 7 2.7576 3.1273 -4.5573 17 14 2.5823 5.8922 -4.4943 18 1 3.8193 6.7093 -4.4079 19 1 2.1663 5.7733 -5.9149 20 1 1.5013 6.5466 -3.7145 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8935 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 1.6441 1.9013 0.7813 27 1 3.5746 2.1287 2.0370 28 1 3.7142 0.3616 1.8634 29 1 5.8974 1.4164 2.4629 30 1 5.9583 0.6160 0.8739 31 1 5.9222 2.0019 -1.1233 32 1 5.8353 3.7693 -0.9285 33 1 2.4749 3.2273 -5.4798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686581160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:40 Heat of formation + Delta-G solvation = -82.421021 kcal Electronic energy + Delta-G solvation = -15218.096251 eV Core-core repulsion = 12665.346047 eV Total energy + Delta-G solvation = -2552.750204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19021 -36.18397 -35.62536 -32.16609 -31.52124 -29.52231 -28.09898 -24.54630 -23.44225 -22.55435 -21.62964 -19.80596 -17.42358 -16.24675 -15.64910 -15.25543 -15.16910 -14.45972 -14.11357 -13.83916 -13.60292 -13.22676 -12.59417 -12.27762 -11.69905 -11.59037 -11.51123 -11.34757 -11.11772 -10.93314 -10.80040 -10.62518 -10.27907 -10.04248 -9.79029 -9.08647 -8.88660 -7.88095 -7.75508 -5.84338 -3.46282 3.37748 3.39698 3.42388 4.18055 4.42148 4.53743 4.98926 5.19189 5.21807 5.36859 5.45212 5.51178 5.58414 5.71744 5.79100 5.87481 5.91460 5.98617 6.04194 6.12996 6.21725 6.31515 6.44515 6.50711 6.71036 6.85561 7.54342 7.55420 7.60204 7.88835 8.52839 9.58976 10.27267 11.36389 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.010411 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.996291 B = 2688.916584 C = 3582.908454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 N -0.663 5.663 4 C 0.093 3.907 5 H 0.079 0.921 6 C -0.182 4.182 7 C 0.066 3.934 8 O -0.388 6.388 9 C 0.039 3.961 10 C 0.082 3.918 11 H 0.046 0.954 12 O -0.265 6.265 13 C -0.355 4.355 14 H 0.059 0.941 15 C 0.024 3.976 16 N -0.888 5.888 17 Si 0.921 3.079 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.279 1.279 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.332 0.668 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -4.939 11.151 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 N -0.292 5.292 4 C -0.017 4.017 5 H 0.097 0.903 6 C -0.222 4.222 7 C -0.012 4.012 8 O -0.307 6.307 9 C -0.039 4.039 10 C 0.021 3.979 11 H 0.064 0.936 12 O -0.179 6.179 13 C -0.434 4.434 14 H 0.077 0.923 15 C -0.174 4.174 16 N -0.531 5.531 17 Si 0.748 3.252 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.205 1.205 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.035 0.965 26 H 0.150 0.850 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.709 -4.944 10.253 11.405 hybrid contribution -0.148 0.555 0.572 0.811 sum 0.561 -4.389 10.825 11.695 Atomic orbital electron populations 1.21749 0.95390 1.01012 1.02464 1.21902 0.95425 0.90067 0.99695 1.60354 1.06969 1.12565 1.49278 1.21704 0.87674 0.99441 0.92902 0.90288 1.22988 0.97902 1.02087 0.99216 1.22419 0.93451 0.87310 0.97993 1.87890 1.78423 1.37224 1.27211 1.23409 0.96772 1.02650 0.81032 1.22232 0.91833 0.95191 0.88610 0.93599 1.85735 1.84870 1.28263 1.19026 1.20803 1.44618 0.82813 0.95169 0.92281 1.24875 0.99107 0.97737 0.95682 1.70015 1.48570 1.27544 1.06967 0.86112 0.78434 0.82435 0.78173 1.20535 1.21028 1.20497 0.91359 0.92772 0.93336 0.90996 0.96510 0.85009 0.91099 0.91414 0.89533 0.93437 0.93031 0.88490 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.17 37.16 0.38 -1.65 16 2 C 0.06 0.90 6.21 -3.82 -0.02 0.88 16 3 N -0.66 -12.12 6.18 -106.52 -0.66 -12.78 16 4 C 0.09 1.72 2.23 -67.53 -0.15 1.57 16 5 H 0.08 1.54 7.80 -51.93 -0.41 1.13 16 6 C -0.18 -2.62 5.39 -26.59 -0.14 -2.76 16 7 C 0.07 0.94 6.84 37.21 0.25 1.20 16 8 O -0.39 -6.96 10.77 -35.23 -0.38 -7.34 16 9 C 0.04 0.77 6.48 37.21 0.24 1.01 16 10 C 0.08 1.82 2.48 -26.59 -0.07 1.76 16 11 H 0.05 1.05 7.80 -51.93 -0.41 0.64 16 12 O -0.26 -7.52 9.36 -16.48 -0.15 -7.68 16 13 C -0.35 -10.44 9.78 30.88 0.30 -10.14 16 14 H 0.06 1.66 7.65 -52.48 -0.40 1.25 16 15 C 0.02 0.71 5.49 -17.51 -0.10 0.62 16 16 N -0.89 -28.12 13.67 55.48 0.76 -27.36 16 17 Si 0.92 22.48 29.55 -169.99 -5.02 17.46 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 25 H 0.02 0.23 7.54 -51.93 -0.39 -0.17 16 26 H 0.33 5.46 8.44 -39.29 -0.33 5.13 16 27 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 28 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -33.00 274.18 -5.89 -38.89 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.26 Total: 2.19 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.70 Total: -7.52 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.10 Total: -40.14 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.53 Total: -15.01 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.00 -5.89 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686581160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.536 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds