Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 120.00001 * 2 1 4 4 H 1.07997 * 120.00152 * 156.12006 * 3 2 1 5 5 C 1.38809 * 119.99904 * 336.11499 * 3 2 1 6 6 N 1.31619 * 120.00244 * 330.40059 * 5 3 2 7 7 Si 1.86807 * 119.99949 * 150.39933 * 5 3 2 8 8 H 1.48498 * 109.47178 * 180.02562 * 7 5 3 9 9 H 1.48499 * 109.47135 * 300.00457 * 7 5 3 10 10 H 1.48495 * 109.46824 * 60.00273 * 7 5 3 11 11 C 1.46493 * 120.00158 * 179.97438 * 2 1 3 12 12 H 1.08993 * 108.19940 * 182.83075 * 11 2 1 13 13 C 1.53079 * 108.29340 * 65.83045 * 11 2 1 14 14 C 1.51411 * 105.01490 * 143.88415 * 13 11 2 15 15 C 1.54617 * 109.12268 * 105.43922 * 14 13 11 16 16 S 1.82324 * 110.93663 * 320.75112 * 15 14 13 17 17 C 1.79262 * 106.80386 * 319.08194 * 16 15 14 18 18 C 1.44824 * 108.29442 * 300.00529 * 11 2 1 19 19 H 1.09001 * 109.47066 * 93.09720 * 1 2 3 20 20 H 1.09000 * 109.47494 * 213.09914 * 1 2 3 21 21 H 1.08998 * 109.47352 * 333.10268 * 1 2 3 22 22 H 0.96998 * 120.00164 * 354.62556 * 6 5 3 23 23 H 1.08999 * 110.32749 * 262.75695 * 13 11 2 24 24 H 1.09005 * 110.32326 * 25.01245 * 13 11 2 25 25 H 1.08994 * 109.53200 * 345.54201 * 14 13 11 26 26 H 1.09007 * 109.58842 * 225.36533 * 14 13 11 27 27 H 1.08999 * 109.18863 * 200.37272 * 15 14 13 28 28 H 1.09001 * 109.14549 * 81.10220 * 15 14 13 29 29 H 1.08998 * 109.43023 * 328.58284 * 17 16 15 30 30 H 1.08999 * 109.39605 * 208.70528 * 17 16 15 31 31 H 1.09001 * 109.30118 * 305.90283 * 18 11 2 32 32 H 1.08997 * 109.30576 * 65.49984 * 18 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1603 1.2260 0.3786 5 6 1.5447 2.3366 -0.4867 6 7 0.6338 2.2514 -1.4330 7 14 2.0235 4.0061 0.2012 8 1 1.2383 5.0661 -0.4806 9 1 1.7402 4.0407 1.6585 10 1 3.4723 4.2384 -0.0271 11 6 2.1975 -1.2686 0.0006 12 1 3.2633 -1.0463 0.0516 13 6 1.9224 -1.9829 -1.3251 14 6 3.2253 -2.6682 -1.6792 15 6 3.0866 -4.1858 -1.4181 16 16 2.1352 -4.5006 0.1050 17 6 2.6820 -3.2969 1.3157 18 6 1.8293 -2.0056 1.1917 19 1 -0.3633 -0.0555 -1.0262 20 1 -0.3634 -0.8609 0.5612 21 1 -0.3634 0.9165 0.4649 22 1 0.4410 1.3946 -1.8448 23 1 1.1287 -2.7196 -1.2007 24 1 1.6529 -1.2605 -2.0956 25 1 4.0286 -2.2643 -1.0632 26 1 3.4529 -2.4989 -2.7317 27 1 4.0795 -4.6241 -1.3172 28 1 2.5751 -4.6486 -2.2620 29 1 3.7308 -3.0573 1.1407 30 1 2.5672 -3.7126 2.3168 31 1 1.9942 -1.3792 2.0683 32 1 0.7752 -2.2772 1.1359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692331121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = 18.685749 kcal Electronic energy + Delta-G solvation = -13321.864258 eV Core-core repulsion = 11216.251243 eV Total energy + Delta-G solvation = -2105.613015 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.11884 -34.41601 -32.54890 -30.41550 -27.67775 -26.03115 -24.74741 -22.19729 -21.31752 -19.25903 -17.38604 -16.25244 -15.16936 -14.60128 -14.29630 -13.81596 -13.61265 -13.48610 -13.14179 -12.63532 -12.32701 -11.68458 -11.41888 -11.03816 -10.90210 -10.71036 -10.57963 -10.33065 -10.18038 -9.96478 -9.90592 -9.51806 -9.30201 -8.29725 -7.35768 -6.86266 -6.02735 -3.13309 1.87091 2.85687 3.50932 3.55237 3.72886 4.59746 4.95510 5.01577 5.05238 5.24013 5.36798 5.47831 5.50266 5.64994 5.81465 5.83620 6.05453 6.19724 6.25262 6.38456 6.58816 6.64505 6.66328 6.88198 7.01584 7.16050 7.22573 8.03616 8.62277 9.19061 9.91961 10.32910 11.25555 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.053505 B = 0.008438 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.194507 B = 3317.380736 C = 3405.107933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.604 5.604 3 C -0.356 4.356 4 H 0.054 0.946 5 C -0.022 4.022 6 N -0.912 5.912 7 Si 1.058 2.942 8 H -0.286 1.286 9 H -0.295 1.295 10 H -0.294 1.294 11 C 0.170 3.830 12 H 0.053 0.947 13 C -0.143 4.143 14 C -0.121 4.121 15 C -0.078 4.078 16 S -0.271 6.271 17 C -0.084 4.084 18 C -0.116 4.116 19 H 0.007 0.993 20 H 0.016 0.984 21 H 0.048 0.952 22 H 0.270 0.730 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -11.090 2.364 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.328 5.328 3 C -0.484 4.484 4 H 0.072 0.928 5 C -0.225 4.225 6 N -0.552 5.552 7 Si 0.888 3.112 8 H -0.212 1.212 9 H -0.222 1.222 10 H -0.221 1.221 11 C 0.063 3.937 12 H 0.071 0.929 13 C -0.183 4.183 14 C -0.161 4.161 15 C -0.227 4.227 16 S -0.044 6.044 17 C -0.233 4.233 18 C -0.157 4.157 19 H 0.025 0.975 20 H 0.034 0.966 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.829 -10.195 2.463 10.863 hybrid contribution 1.415 -0.662 -0.188 1.573 sum 4.244 -10.857 2.275 11.877 Atomic orbital electron populations 1.20893 0.84231 0.98342 0.97464 1.44172 1.00829 1.00939 1.86860 1.19923 1.00883 0.87134 1.40503 0.92813 1.25704 0.99168 1.01837 0.95800 1.70778 1.36119 1.28215 1.20054 0.83624 0.75331 0.76353 0.75856 1.21177 1.22209 1.22142 1.19238 0.96168 0.86793 0.91484 0.92856 1.22302 0.96330 0.99771 0.99880 1.22033 0.99719 0.92245 1.02063 1.23978 1.01687 1.00399 0.96592 1.85893 1.60597 1.46676 1.11227 1.23559 1.02622 0.97981 0.99136 1.21105 0.99844 0.94145 1.00571 0.97459 0.96553 0.93362 0.91934 0.90457 0.91012 0.91668 0.91403 0.90699 0.88463 0.90233 0.88408 0.90871 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.29 8.45 59.84 0.51 3.80 16 2 N -0.60 -15.07 2.44 -177.90 -0.43 -15.50 16 3 C -0.36 -9.96 9.37 -15.06 -0.14 -10.10 16 4 H 0.05 1.52 7.91 -52.49 -0.42 1.10 16 5 C -0.02 -0.64 4.61 -17.43 -0.08 -0.72 16 6 N -0.91 -27.59 12.74 55.49 0.71 -26.89 16 7 Si 1.06 25.53 30.01 -169.99 -5.10 20.43 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.17 3.46 1.87 -71.72 -0.13 3.32 16 12 H 0.05 1.14 6.32 -51.93 -0.33 0.81 16 13 C -0.14 -2.66 5.03 -27.49 -0.14 -2.79 16 14 C -0.12 -1.85 5.69 -26.68 -0.15 -2.00 16 15 C -0.08 -1.03 6.59 38.01 0.25 -0.77 16 16 S -0.27 -3.93 20.08 -107.50 -2.16 -6.09 16 17 C -0.08 -1.21 5.94 38.34 0.23 -0.98 16 18 C -0.12 -2.04 4.53 -29.37 -0.13 -2.17 16 19 H 0.01 0.19 6.87 -51.93 -0.36 -0.17 16 20 H 0.02 0.34 6.39 -51.93 -0.33 0.01 16 21 H 0.05 1.26 7.27 -51.93 -0.38 0.88 16 22 H 0.27 8.21 6.38 -40.82 -0.26 7.95 16 23 H 0.08 1.41 6.23 -51.93 -0.32 1.08 16 24 H 0.07 1.55 7.99 -51.93 -0.41 1.14 16 25 H 0.06 1.02 6.54 -51.93 -0.34 0.68 16 26 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.11 7.88 -51.76 -0.41 0.70 16 30 H 0.10 1.24 8.14 -51.75 -0.42 0.82 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.26 6.63 -51.93 -0.34 0.92 16 LS Contribution 255.81 15.07 3.86 3.86 Total: -1.00 -29.78 255.81 -7.74 -37.51 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.81 Total: -0.90 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 0.21 Total: -12.42 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.27 Total: -42.39 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.10 Total: 20.43 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.16 Total: -6.09 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.78 -7.74 -37.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692331121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.198 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds