Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 C 1.50706 * 109.46942 * 175.00099 * 4 2 1 6 6 H 1.08002 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00097 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00133 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00139 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47291 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47472 * 120.00005 * 9 7 5 12 12 H 1.48504 * 109.47209 * 240.00205 * 9 7 5 13 13 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 14 14 C 1.46901 * 110.99870 * 274.99984 * 13 2 1 15 15 H 1.08998 * 110.45393 * 323.84432 * 14 13 2 16 16 C 1.54475 * 110.51250 * 86.45385 * 14 13 2 17 17 O 1.44427 * 104.80316 * 142.62434 * 16 14 13 18 18 C 1.44417 * 105.27284 * 319.48666 * 17 16 14 19 19 C 1.54480 * 104.80829 * 40.51367 * 18 17 16 20 20 H 1.09000 * 110.51117 * 94.66127 * 19 18 17 21 21 O 1.42900 * 110.51559 * 217.37666 * 19 18 17 22 22 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 23 23 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 24 24 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 26 26 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 27 27 H 0.96994 * 120.00544 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99869 * 151.04696 * 13 2 1 29 29 H 1.09000 * 110.37091 * 261.45511 * 16 14 13 30 30 H 1.08995 * 110.37332 * 23.79065 * 16 14 13 31 31 H 1.09004 * 110.37451 * 159.34745 * 18 17 16 32 32 H 1.09002 * 110.37437 * 281.57263 * 18 17 16 33 33 H 0.96699 * 113.99675 * 294.64544 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5763 -1.8362 -3.3005 9 14 6.0920 -1.0616 -2.4366 10 1 6.5838 -0.2921 -1.2656 11 1 6.6853 -2.4228 -2.4196 12 1 6.4870 -0.3651 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2227 2.3469 15 1 2.3837 1.2190 2.0234 16 6 0.7188 0.2777 3.0706 17 8 1.0491 0.3720 4.4735 18 6 2.1634 -0.5268 4.6632 19 6 3.0548 -0.3189 3.4187 20 1 3.8378 0.4101 3.6273 21 8 3.6238 -1.5601 2.9972 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0606 -2.2430 -4.0358 28 1 2.9173 -1.1205 1.0288 29 1 0.1561 1.1557 2.7534 30 1 0.1486 -0.6304 2.8753 31 1 2.7105 -0.2671 5.5695 32 1 1.8146 -1.5583 4.7140 33 1 4.2423 -1.9452 3.6330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = -98.650446 kcal Electronic energy + Delta-G solvation = -15167.876667 eV Core-core repulsion = 12614.422702 eV Total energy + Delta-G solvation = -2553.453965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.62866 -36.24128 -35.88230 -32.75489 -30.96371 -28.60843 -27.62729 -26.92620 -22.98522 -22.74025 -20.28879 -19.53785 -17.40127 -16.47376 -16.23725 -15.30193 -15.13285 -14.86783 -14.37539 -14.13127 -13.19838 -12.91045 -12.74261 -12.05596 -11.88433 -11.52852 -11.34865 -11.17056 -11.07046 -10.65687 -10.55719 -10.38364 -10.23794 -9.97579 -9.60614 -9.19794 -9.03278 -8.37611 -7.65437 -6.00402 -4.02915 3.30138 3.37668 3.41000 3.86587 4.42967 4.45333 4.65488 4.81360 4.91506 5.17707 5.36811 5.46955 5.60391 5.74425 5.82932 5.93345 5.99833 6.10469 6.23820 6.31724 6.53407 6.82397 6.93971 6.97300 7.53409 7.64225 7.72855 7.99186 8.11259 8.37546 8.45908 9.02889 9.60933 11.10679 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.008721 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.511983 B = 3209.836284 C = 3816.665684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.520 4.520 6 H 0.051 0.949 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.660 5.660 14 C 0.059 3.941 15 H 0.058 0.942 16 C 0.053 3.947 17 O -0.379 6.379 18 C 0.019 3.981 19 C 0.069 3.931 20 H 0.067 0.933 21 O -0.538 6.538 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.260 0.740 28 H 0.372 0.628 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 2.917 13.148 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.558 4.558 6 H 0.070 0.930 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.299 5.299 14 C -0.052 4.052 15 H 0.076 0.924 16 C -0.024 4.024 17 O -0.298 6.298 18 C -0.059 4.059 19 C 0.009 3.991 20 H 0.084 0.916 21 O -0.342 6.342 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.895 2.803 12.782 13.402 hybrid contribution 2.297 0.411 -0.033 2.333 sum -0.598 3.214 12.749 13.161 Atomic orbital electron populations 1.21898 0.96802 1.01421 0.99584 1.21754 0.93405 0.95768 0.91712 0.95372 1.19278 0.95457 0.96251 0.90712 1.21196 0.92208 1.34319 1.08115 0.93044 1.24983 0.98236 0.95227 0.95728 1.69968 1.35364 1.35789 1.11966 0.86562 0.86026 0.77744 0.77782 1.19919 1.20975 1.21137 1.60523 1.36138 1.30063 1.03169 1.22920 0.93696 0.95836 0.92774 0.92407 1.23735 0.96682 1.02463 0.79551 1.89083 1.50231 1.64059 1.26409 1.24116 0.88244 0.95184 0.98327 1.23270 0.95024 0.86915 0.93930 0.91551 1.86627 1.63418 1.36641 1.47538 0.94344 0.93283 0.92568 0.95532 0.96041 0.93041 0.80287 0.89417 0.90682 0.89461 0.91237 0.77877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.21 37.16 0.34 -2.17 16 2 C 0.08 1.75 2.59 -67.71 -0.18 1.58 16 3 H 0.03 0.61 7.47 -51.93 -0.39 0.22 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.53 8.12 -34.44 -0.28 -14.81 16 6 H 0.05 1.41 7.49 -52.49 -0.39 1.02 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.66 -13.14 5.86 -98.10 -0.57 -13.71 16 14 C 0.06 0.98 3.43 -66.14 -0.23 0.76 16 15 H 0.06 0.98 7.51 -51.93 -0.39 0.59 16 16 C 0.05 0.80 5.71 37.93 0.22 1.01 16 17 O -0.38 -5.64 11.65 -35.23 -0.41 -6.06 16 18 C 0.02 0.23 7.38 37.93 0.28 0.51 16 19 C 0.07 0.96 4.48 -25.16 -0.11 0.85 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 21 O -0.54 -7.89 11.48 -35.23 -0.40 -8.30 16 22 H 0.04 0.60 5.88 -51.93 -0.31 0.30 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.37 8.30 5.62 -39.29 -0.22 8.08 16 29 H 0.09 1.22 7.40 -51.93 -0.38 0.83 16 30 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.37 3.51 9.12 45.56 0.42 3.92 16 LS Contribution 267.88 15.07 4.04 4.04 Total: -1.00 -31.21 267.88 -5.99 -37.21 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.18 Total: 6.46 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.18 Total: -10.26 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.16 Total: -39.77 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.81 Total: -14.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.21 -5.99 -37.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.445 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds