Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 C 1.50706 * 109.46942 * 175.00099 * 4 2 1 6 6 H 1.08002 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00097 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00133 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00139 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47291 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47472 * 120.00005 * 9 7 5 12 12 H 1.48504 * 109.47209 * 240.00205 * 9 7 5 13 13 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 14 14 C 1.46901 * 110.99870 * 274.99984 * 13 2 1 15 15 H 1.08998 * 110.45393 * 323.84432 * 14 13 2 16 16 C 1.54475 * 110.51250 * 86.45385 * 14 13 2 17 17 O 1.44427 * 104.80316 * 142.62434 * 16 14 13 18 18 C 1.44417 * 105.27284 * 319.48666 * 17 16 14 19 19 C 1.54480 * 104.80829 * 40.51367 * 18 17 16 20 20 H 1.09000 * 110.51117 * 94.66127 * 19 18 17 21 21 O 1.42900 * 110.51559 * 217.37666 * 19 18 17 22 22 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 23 23 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 24 24 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 26 26 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 27 27 H 0.96994 * 120.00544 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99869 * 151.04696 * 13 2 1 29 29 H 1.09000 * 110.37091 * 261.45511 * 16 14 13 30 30 H 1.08995 * 110.37332 * 23.79065 * 16 14 13 31 31 H 1.09004 * 110.37451 * 159.34745 * 18 17 16 32 32 H 1.09002 * 110.37437 * 281.57263 * 18 17 16 33 33 H 0.96699 * 113.99675 * 294.64544 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5763 -1.8362 -3.3005 9 14 6.0920 -1.0616 -2.4366 10 1 6.5838 -0.2921 -1.2656 11 1 6.6853 -2.4228 -2.4196 12 1 6.4870 -0.3651 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2227 2.3469 15 1 2.3837 1.2190 2.0234 16 6 0.7188 0.2777 3.0706 17 8 1.0491 0.3720 4.4735 18 6 2.1634 -0.5268 4.6632 19 6 3.0548 -0.3189 3.4187 20 1 3.8378 0.4101 3.6273 21 8 3.6238 -1.5601 2.9972 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0606 -2.2430 -4.0358 28 1 2.9173 -1.1205 1.0288 29 1 0.1561 1.1557 2.7534 30 1 0.1486 -0.6304 2.8753 31 1 2.7105 -0.2671 5.5695 32 1 1.8146 -1.5583 4.7140 33 1 4.2423 -1.9452 3.6330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = -123.958964 kcal Electronic energy + Delta-G solvation = -15168.974127 eV Core-core repulsion = 12614.422702 eV Total energy + Delta-G solvation = -2554.551425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79725 -37.78578 -37.06940 -34.79740 -32.52684 -29.80580 -29.26975 -28.52573 -25.01174 -23.84308 -21.53519 -21.23790 -18.60241 -18.48234 -17.54292 -16.67225 -16.49218 -16.25871 -16.02848 -15.56744 -14.83011 -14.20467 -14.04711 -13.77961 -13.42650 -13.23989 -13.02347 -12.67799 -12.51248 -12.40303 -12.29838 -12.17112 -11.59946 -11.26461 -11.08740 -10.98072 -10.69254 -10.58360 -9.21641 -8.19565 -6.29865 1.38438 1.38997 1.51356 2.40077 2.76525 3.12693 3.33950 3.45743 3.63020 3.85174 4.07863 4.27991 4.31895 4.45046 4.58861 4.73285 4.74245 4.79633 4.84408 4.87499 5.02430 5.22190 5.33663 5.47867 5.52862 5.73186 5.83530 6.20401 6.40473 6.63827 6.84698 7.01093 7.38597 8.92404 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.008721 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.511983 B = 3209.836284 C = 3816.665684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.091 3.909 3 H 0.024 0.976 4 C 0.027 3.973 5 C -0.531 4.531 6 H 0.054 0.946 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.663 5.663 14 C 0.047 3.953 15 H 0.054 0.946 16 C 0.060 3.940 17 O -0.388 6.388 18 C 0.023 3.977 19 C 0.071 3.929 20 H 0.084 0.916 21 O -0.563 6.563 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.048 0.952 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.263 0.737 28 H 0.356 0.644 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 3.616 14.848 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.019 4.019 3 H 0.042 0.958 4 C -0.010 4.010 5 C -0.569 4.569 6 H 0.072 0.928 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.300 5.300 14 C -0.064 4.064 15 H 0.072 0.928 16 C -0.017 4.017 17 O -0.307 6.307 18 C -0.054 4.054 19 C 0.011 3.989 20 H 0.102 0.898 21 O -0.371 6.371 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.179 0.821 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.055 3.509 14.517 15.076 hybrid contribution 2.027 0.173 -0.536 2.104 sum -0.027 3.683 13.981 14.458 Atomic orbital electron populations 1.21811 0.94378 1.01516 1.01217 1.21578 0.95326 0.94648 0.90311 0.95784 1.19136 0.94911 0.94678 0.92293 1.21508 0.93248 1.34036 1.08096 0.92779 1.25908 1.03498 0.94817 0.95336 1.70098 1.37495 1.36804 1.12723 0.85426 0.79683 0.77940 0.78114 1.18805 1.20442 1.20591 1.60517 1.35145 1.30862 1.03434 1.23097 0.95850 0.95118 0.92369 0.92769 1.23607 0.95708 1.02608 0.79788 1.89078 1.51099 1.64645 1.25831 1.24235 0.87430 0.94903 0.98863 1.23292 0.95246 0.87103 0.93293 0.89845 1.86569 1.64321 1.37042 1.49136 0.91554 0.92790 0.93242 0.98605 0.98557 0.92825 0.82068 0.88194 0.91579 0.86181 0.91319 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.21 71.98 0.66 -4.00 16 2 C 0.09 3.87 2.59 44.91 0.12 3.98 16 3 H 0.02 1.04 7.47 -2.38 -0.02 1.02 16 4 C 0.03 1.45 4.57 29.85 0.14 1.59 16 5 C -0.53 -30.06 8.12 25.60 0.21 -29.86 16 6 H 0.05 2.97 7.49 -2.91 -0.02 2.95 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 9 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 N -0.66 -26.20 5.86 -464.27 -2.72 -28.92 16 14 C 0.05 1.49 3.43 45.93 0.16 1.65 16 15 H 0.05 1.76 7.51 -2.39 -0.02 1.74 16 16 C 0.06 1.69 5.71 72.48 0.41 2.11 16 17 O -0.39 -10.52 11.65 -148.98 -1.74 -12.25 16 18 C 0.02 0.50 7.38 72.49 0.53 1.03 16 19 C 0.07 1.82 4.48 31.61 0.14 1.96 16 20 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 21 O -0.56 -15.60 11.48 -148.98 -1.71 -17.31 16 22 H 0.07 1.97 5.88 -2.38 -0.01 1.95 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.36 15.97 5.62 -89.69 -0.50 15.46 16 29 H 0.10 2.53 7.40 -2.39 -0.02 2.51 16 30 H 0.07 1.99 8.06 -2.39 -0.02 1.97 16 31 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 33 H 0.40 6.59 9.12 -74.06 -0.68 5.92 16 Total: -1.00 -67.12 267.88 -1.10 -68.22 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.07 Total: 21.33 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 2.83 Total: -20.94 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.44 Total: -85.63 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -3.45 Total: -29.57 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.12 -1.10 -68.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.743 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds