Wall clock time and date at job start Mon Mar 30 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 14 14 C 1.46900 * 110.99981 * 274.99476 * 13 2 1 15 15 H 1.09007 * 110.45440 * 32.40089 * 14 13 2 16 16 C 1.54478 * 110.51370 * 269.64353 * 14 13 2 17 17 O 1.44422 * 104.80466 * 217.37436 * 16 14 13 18 18 C 1.44426 * 105.27403 * 40.51566 * 17 16 14 19 19 C 1.54484 * 104.80083 * 319.48621 * 18 17 16 20 20 H 1.09003 * 110.51057 * 142.62595 * 19 18 17 21 21 O 1.42897 * 110.62498 * 265.27511 * 19 18 17 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 25 25 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 26 26 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 27 27 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 28 28 H 1.00900 * 111.00332 * 38.95526 * 13 2 1 29 29 H 1.08994 * 110.37143 * 336.21338 * 16 14 13 30 30 H 1.09002 * 110.36816 * 98.54442 * 16 14 13 31 31 H 1.08997 * 110.37471 * 200.65511 * 18 17 16 32 32 H 1.09000 * 110.46998 * 78.36007 * 18 17 16 33 33 H 0.96701 * 114.00034 * 294.70872 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0920 -1.0615 -2.4367 10 1 6.6999 -2.2148 -1.7256 11 1 6.5294 -1.0686 -3.8558 12 1 6.5267 0.2031 -1.7911 13 7 2.0196 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2911 0.9693 2.2824 16 6 3.4677 0.9023 2.4219 17 8 3.7607 0.9880 3.8334 18 6 3.3124 -0.2661 4.3920 19 6 1.9780 -0.5639 3.6727 20 1 1.8797 -1.6316 3.4768 21 8 0.8729 -0.0945 4.4476 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.7515 -1.7715 -1.2057 26 1 1.6053 -0.2617 -2.1370 27 1 4.0605 -2.2431 -4.0360 28 1 1.4496 -1.4980 1.4100 29 1 4.2167 0.2941 1.9150 30 1 3.4256 1.8987 1.9819 31 1 3.1511 -0.1674 5.4654 32 1 4.0370 -1.0546 4.1888 33 1 0.7605 -0.5540 5.2910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:11 Heat of formation + Delta-G solvation = -99.148372 kcal Electronic energy + Delta-G solvation = -15069.182691 eV Core-core repulsion = 12515.707134 eV Total energy + Delta-G solvation = -2553.475557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.63412 -36.34918 -36.01548 -32.78057 -31.13256 -28.58909 -27.39766 -26.92389 -23.21794 -22.61612 -20.55736 -19.73897 -17.29714 -16.41284 -16.04676 -15.97826 -15.09229 -14.53694 -14.24681 -14.00755 -13.19680 -12.94564 -12.72796 -12.31356 -12.05763 -11.75285 -11.48309 -11.40527 -10.98032 -10.63812 -10.62711 -10.41540 -10.22954 -10.01919 -9.48623 -9.26766 -9.00537 -8.26284 -7.73147 -5.88643 -3.86602 3.39080 3.45102 3.48708 3.98634 4.09379 4.55747 4.58257 4.87393 4.91777 5.17564 5.48188 5.53144 5.63977 5.68175 5.69534 5.74990 5.88954 6.02782 6.10843 6.25587 6.44243 6.60126 6.87068 6.99580 7.47829 7.53686 7.66661 7.95868 7.99381 8.12921 8.58061 9.18354 9.74820 11.23413 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.008814 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.572777 B = 3176.067227 C = 3824.237178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.652 5.652 14 C 0.062 3.938 15 H 0.065 0.935 16 C 0.055 3.945 17 O -0.378 6.378 18 C 0.022 3.978 19 C 0.065 3.935 20 H 0.077 0.923 21 O -0.560 6.560 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.017 0.983 26 H 0.019 0.981 27 H 0.257 0.743 28 H 0.335 0.665 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 1.676 13.365 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.284 5.284 14 C -0.049 4.049 15 H 0.082 0.918 16 C -0.022 4.022 17 O -0.296 6.296 18 C -0.056 4.056 19 C 0.005 3.995 20 H 0.095 0.905 21 O -0.365 6.365 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.171 2.255 12.637 13.223 hybrid contribution 0.040 -0.542 0.424 0.689 sum -3.131 1.713 13.061 13.540 Atomic orbital electron populations 1.22555 0.99254 1.01298 1.00834 1.21881 0.90135 0.98169 0.91894 0.91623 1.19113 0.96281 0.95392 0.89613 1.21138 0.91831 1.32975 1.06830 0.92353 1.25009 0.97985 0.95922 0.96029 1.69962 1.35190 1.36953 1.12347 0.86645 0.86453 0.78330 0.76826 1.20923 1.21591 1.20024 1.60724 1.57859 1.08014 1.01823 1.22813 0.97999 0.95290 0.88824 0.91750 1.23585 0.95627 1.01510 0.81507 1.89093 1.83416 1.35366 1.21711 1.24008 0.95065 0.87952 0.98550 1.23422 0.86134 0.98048 0.91854 0.90495 1.86570 1.49943 1.64831 1.35169 0.92997 0.94224 0.92334 0.96457 0.96298 0.93320 0.84652 0.89820 0.89213 0.89341 0.91293 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.15 37.16 0.34 -2.73 16 2 C 0.09 1.76 2.40 -67.71 -0.16 1.60 16 3 H 0.07 1.34 7.86 -51.93 -0.41 0.93 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.65 -11.82 5.77 -98.10 -0.57 -12.38 16 14 C 0.06 1.00 3.01 -66.15 -0.20 0.80 16 15 H 0.06 1.10 7.06 -51.93 -0.37 0.73 16 16 C 0.05 0.92 7.35 37.93 0.28 1.20 16 17 O -0.38 -6.18 11.65 -35.23 -0.41 -6.59 16 18 C 0.02 0.28 7.38 37.94 0.28 0.56 16 19 C 0.06 0.86 4.16 -25.16 -0.10 0.75 16 20 H 0.08 0.93 7.55 -51.93 -0.39 0.54 16 21 O -0.56 -6.99 13.30 -35.23 -0.47 -7.46 16 22 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 23 H 0.04 0.62 7.50 -51.93 -0.39 0.23 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.33 5.64 7.81 -39.29 -0.31 5.34 16 29 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.38 2.76 9.12 45.56 0.42 3.17 16 LS Contribution 275.20 15.07 4.15 4.15 Total: -1.00 -31.62 275.20 -6.04 -37.66 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.36 Total: 3.78 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.10 Total: -9.63 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.17 Total: -38.88 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.88 Total: -14.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.62 -6.04 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.486 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds