Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 14 14 C 1.46900 * 110.99981 * 274.99476 * 13 2 1 15 15 H 1.09007 * 110.45440 * 32.40089 * 14 13 2 16 16 C 1.54478 * 110.51370 * 269.64353 * 14 13 2 17 17 O 1.44422 * 104.80466 * 217.37436 * 16 14 13 18 18 C 1.44426 * 105.27403 * 40.51566 * 17 16 14 19 19 C 1.54484 * 104.80083 * 319.48621 * 18 17 16 20 20 H 1.09003 * 110.51057 * 142.62595 * 19 18 17 21 21 O 1.42897 * 110.62498 * 265.27511 * 19 18 17 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 25 25 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 26 26 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 27 27 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 28 28 H 1.00900 * 111.00332 * 38.95526 * 13 2 1 29 29 H 1.08994 * 110.37143 * 336.21338 * 16 14 13 30 30 H 1.09002 * 110.36816 * 98.54442 * 16 14 13 31 31 H 1.08997 * 110.37471 * 200.65511 * 18 17 16 32 32 H 1.09000 * 110.46998 * 78.36007 * 18 17 16 33 33 H 0.96701 * 114.00034 * 294.70872 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0920 -1.0615 -2.4367 10 1 6.6999 -2.2148 -1.7256 11 1 6.5294 -1.0686 -3.8558 12 1 6.5267 0.2031 -1.7911 13 7 2.0196 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2911 0.9693 2.2824 16 6 3.4677 0.9023 2.4219 17 8 3.7607 0.9880 3.8334 18 6 3.3124 -0.2661 4.3920 19 6 1.9780 -0.5639 3.6727 20 1 1.8797 -1.6316 3.4768 21 8 0.8729 -0.0945 4.4476 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.7515 -1.7715 -1.2057 26 1 1.6053 -0.2617 -2.1370 27 1 4.0605 -2.2431 -4.0360 28 1 1.4496 -1.4980 1.4100 29 1 4.2167 0.2941 1.9150 30 1 3.4256 1.8987 1.9819 31 1 3.1511 -0.1674 5.4654 32 1 4.0370 -1.0546 4.1888 33 1 0.7605 -0.5540 5.2910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -125.006640 kcal Electronic energy + Delta-G solvation = -15070.303990 eV Core-core repulsion = 12515.707134 eV Total energy + Delta-G solvation = -2554.596855 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81488 -37.88083 -37.03331 -34.80714 -32.68632 -29.71772 -29.26862 -28.29996 -25.10032 -23.88592 -21.79612 -21.36740 -18.39116 -18.33980 -17.41300 -17.18365 -16.49694 -16.27516 -15.60970 -15.53448 -14.57562 -14.42865 -13.98263 -13.89369 -13.56637 -13.22665 -13.18372 -12.76155 -12.62839 -12.48800 -12.30332 -12.01803 -11.71925 -11.22648 -11.12420 -11.08430 -10.62957 -10.47149 -9.18416 -8.08384 -6.12818 1.43191 1.43484 1.54110 2.48336 2.83236 3.03901 3.25983 3.41792 3.75146 3.82911 4.04468 4.22731 4.28432 4.41951 4.50657 4.58281 4.64822 4.75555 4.78594 4.90828 4.98842 5.19990 5.26746 5.51613 5.60751 5.75571 5.91502 6.26961 6.43022 6.60356 6.85825 7.01144 7.52771 9.03831 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.008814 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.572777 B = 3176.067227 C = 3824.237178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 H 0.058 0.942 4 C 0.039 3.961 5 C -0.497 4.497 6 H 0.059 0.941 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.662 5.662 14 C 0.063 3.937 15 H 0.058 0.942 16 C 0.056 3.944 17 O -0.393 6.393 18 C 0.017 3.983 19 C 0.075 3.925 20 H 0.091 0.909 21 O -0.572 6.572 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.058 0.942 25 H -0.006 1.006 26 H -0.007 1.007 27 H 0.258 0.742 28 H 0.342 0.658 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 1.731 15.149 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 H 0.077 0.923 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.295 5.295 14 C -0.048 4.048 15 H 0.076 0.924 16 C -0.021 4.021 17 O -0.312 6.312 18 C -0.060 4.060 19 C 0.016 3.984 20 H 0.109 0.891 21 O -0.381 6.381 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.012 0.988 26 H 0.011 0.989 27 H 0.067 0.933 28 H 0.162 0.838 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.016 2.305 14.462 14.952 hybrid contribution -0.043 -0.566 -0.075 0.572 sum -3.060 1.739 14.387 14.811 Atomic orbital electron populations 1.22411 0.96742 1.01932 1.01778 1.21532 0.92065 0.96899 0.90577 0.92320 1.18983 0.95206 0.94305 0.91393 1.21497 0.93264 1.32228 1.06536 0.92248 1.25846 1.02725 0.95795 0.95840 1.70091 1.37018 1.38130 1.13076 0.85609 0.80858 0.78658 0.76856 1.20310 1.21351 1.19100 1.60516 1.58206 1.08688 1.02083 1.22738 0.97272 0.95126 0.89674 0.92400 1.23452 0.95497 1.01139 0.82031 1.89073 1.83776 1.37232 1.21129 1.24264 0.94854 0.86805 1.00051 1.23224 0.86639 0.98108 0.90466 0.89085 1.86511 1.49379 1.65570 1.36679 0.92525 0.92288 0.92319 0.98772 0.98852 0.93322 0.83796 0.91854 0.89388 0.86426 0.90654 0.74957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 9.15 71.98 0.66 -4.90 16 2 C 0.10 3.91 2.40 44.92 0.11 4.02 16 3 H 0.06 2.39 7.86 -2.39 -0.02 2.37 16 4 C 0.04 1.98 4.65 29.85 0.14 2.12 16 5 C -0.50 -27.79 8.84 25.60 0.23 -27.57 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.66 -23.40 5.77 -464.29 -2.68 -26.08 16 14 C 0.06 1.93 3.01 45.93 0.14 2.07 16 15 H 0.06 1.88 7.06 -2.38 -0.02 1.86 16 16 C 0.06 1.85 7.35 72.48 0.53 2.38 16 17 O -0.39 -12.21 11.65 -148.98 -1.74 -13.95 16 18 C 0.02 0.39 7.38 72.49 0.54 0.93 16 19 C 0.08 1.79 4.16 31.61 0.13 1.92 16 20 H 0.09 1.93 7.55 -2.39 -0.02 1.91 16 21 O -0.57 -12.41 13.30 -148.98 -1.98 -14.39 16 22 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 23 H 0.06 1.71 7.50 -2.38 -0.02 1.70 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.34 11.07 7.81 -89.69 -0.70 10.37 16 29 H 0.06 2.32 8.06 -2.39 -0.02 2.30 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.12 2.00 8.09 -2.39 -0.02 1.98 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.40 4.33 9.12 -74.06 -0.68 3.66 16 Total: -1.00 -67.33 275.20 -1.43 -68.76 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.27 Total: 14.62 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 2.93 Total: -18.93 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.39 Total: -83.40 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -3.72 Total: -28.34 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.33 -1.43 -68.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.243 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds