Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47400 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.53772 * 59.82201 * 11 10 9 13 13 O 1.42907 * 109.47344 * 299.99656 * 12 11 10 14 14 C 1.53174 * 109.54180 * 299.55723 * 11 10 9 15 15 C 1.53088 * 109.16166 * 297.10717 * 14 11 10 16 16 O 1.42897 * 109.41924 * 302.39568 * 15 14 11 17 17 C 1.42904 * 114.09831 * 61.15864 * 16 15 14 18 18 C 1.53101 * 109.41110 * 298.84269 * 17 16 15 19 19 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 20 20 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 21 21 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 22 22 H 1.09001 * 109.47147 * 60.00061 * 10 9 7 23 23 H 1.09005 * 109.47671 * 60.00112 * 12 11 10 24 24 H 1.09000 * 109.46965 * 180.02562 * 12 11 10 25 25 H 0.96699 * 114.00062 * 180.02562 * 13 12 11 26 26 H 1.08995 * 109.52407 * 57.01721 * 14 11 10 27 27 H 1.08997 * 109.52023 * 177.20687 * 14 11 10 28 28 H 1.09000 * 109.48049 * 182.41025 * 15 14 11 29 29 H 1.09005 * 109.49115 * 62.38289 * 15 14 11 30 30 H 1.09000 * 109.48222 * 178.86696 * 17 16 15 31 31 H 1.08995 * 109.49292 * 58.82687 * 17 16 15 32 32 H 1.08995 * 109.52164 * 297.70228 * 18 17 16 33 33 H 1.09000 * 109.51581 * 177.51596 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0636 -4.8198 0.0118 12 6 0.1750 -4.7407 -1.2312 13 8 -0.5403 -3.5035 -1.2275 14 6 0.1948 -4.7434 1.2709 15 6 1.0852 -4.9013 2.5062 16 8 1.7904 -6.1417 2.4280 17 6 2.6552 -6.2509 1.2956 18 6 1.8278 -6.1472 0.0116 19 1 -0.4849 0.8401 0.0004 20 1 0.3555 -2.3880 0.0092 21 1 2.6812 -3.7166 -0.8876 22 1 2.6880 -3.7126 0.8924 23 1 0.7951 -4.7991 -2.1257 24 1 -0.5332 -5.5693 -1.2248 25 1 -1.1254 -3.3852 -1.9882 26 1 -0.3103 -3.7782 1.3069 27 1 -0.5460 -5.5427 1.2513 28 1 0.4668 -4.8906 3.4037 29 1 1.7996 -4.0790 2.5471 30 1 3.1677 -7.2125 1.3210 31 1 3.3901 -5.4464 1.3203 32 1 1.1200 -6.9749 -0.0334 33 1 2.4906 -6.1860 -0.8528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700925030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = -83.485271 kcal Electronic energy + Delta-G solvation = -15650.725940 eV Core-core repulsion = 13097.929586 eV Total energy + Delta-G solvation = -2552.796354 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71622 -36.64682 -34.39389 -33.07751 -30.85769 -30.17382 -27.01692 -25.28551 -23.39077 -22.36945 -22.08568 -18.27451 -17.22201 -16.41507 -15.77506 -15.59928 -14.88601 -14.61719 -14.20077 -13.90992 -13.38508 -12.96625 -12.45503 -12.36213 -12.05661 -11.90304 -11.23018 -10.98471 -10.79728 -10.69889 -10.39960 -10.21169 -9.91727 -9.80552 -9.48219 -9.25590 -9.03645 -8.68235 -6.67387 -5.59333 -2.84893 3.50119 3.55240 3.56795 4.18062 4.56283 4.71875 5.03530 5.12322 5.35614 5.38202 5.59145 5.61836 5.67536 5.76052 5.83473 5.87461 6.00772 6.06026 6.10845 6.20230 6.33804 6.52266 6.60728 6.78220 6.88095 6.90478 7.51481 7.81765 8.28434 8.62660 9.74045 10.40708 10.84776 11.62799 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.037665 B = 0.009410 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.208413 B = 2974.737065 C = 3260.811134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.015 4.015 3 Si 0.900 3.100 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.063 0.937 9 N -0.718 5.718 10 C 0.163 3.837 11 C -0.070 4.070 12 C 0.094 3.906 13 O -0.536 6.536 14 C -0.133 4.133 15 C 0.059 3.941 16 O -0.391 6.391 17 C 0.062 3.938 18 C -0.141 4.141 19 H 0.251 0.749 20 H 0.401 0.599 21 H 0.010 0.990 22 H 0.016 0.984 23 H 0.037 0.963 24 H 0.031 0.969 25 H 0.367 0.633 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -12.614 -0.409 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.211 4.211 3 Si 0.732 3.268 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.367 4.367 8 H 0.081 0.919 9 N -0.369 5.369 10 C 0.035 3.965 11 C -0.070 4.070 12 C 0.016 3.984 13 O -0.340 6.340 14 C -0.171 4.171 15 C -0.018 4.018 16 O -0.310 6.310 17 C -0.015 4.015 18 C -0.179 4.179 19 H 0.061 0.939 20 H 0.243 0.757 21 H 0.028 0.972 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.214 0.786 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.444 -12.551 0.295 12.637 hybrid contribution -0.047 1.081 -0.926 1.424 sum 1.397 -11.470 -0.631 11.572 Atomic orbital electron populations 1.69710 1.04849 1.24927 1.58086 1.24674 0.95447 0.97229 1.03751 0.86287 0.78666 0.84495 0.77352 1.22035 1.21938 1.20999 1.19250 0.90758 0.84731 1.41916 0.91900 1.42701 1.07076 0.98723 1.88355 1.20680 0.92572 0.86091 0.97185 1.20845 0.96020 0.95352 0.94779 1.22022 0.93444 0.86281 0.96689 1.86638 1.61232 1.37233 1.48869 1.22055 0.97852 1.03391 0.93794 1.22651 0.95004 0.86058 0.98044 1.87838 1.59761 1.38021 1.45347 1.22533 0.92096 1.01608 0.85269 1.22123 0.99773 0.97123 0.98875 0.93946 0.75691 0.97219 0.96660 0.94457 0.95127 0.78633 0.88957 0.92463 0.89446 0.91968 0.89476 0.92617 0.91361 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 23.04 29.55 -169.99 -5.02 18.02 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -18.80 4.65 -59.91 -0.28 -19.08 16 10 C 0.16 3.46 4.60 -4.04 -0.02 3.44 16 11 C -0.07 -1.19 0.51 -154.33 -0.08 -1.27 16 12 C 0.09 1.54 5.93 37.16 0.22 1.76 16 13 O -0.54 -10.34 9.77 -35.23 -0.34 -10.69 16 14 C -0.13 -2.33 4.61 -26.60 -0.12 -2.45 16 15 C 0.06 0.98 6.57 37.20 0.24 1.23 16 16 O -0.39 -6.30 10.77 -35.23 -0.38 -6.68 16 17 C 0.06 0.86 6.57 37.21 0.24 1.10 16 18 C -0.14 -1.94 4.92 -26.59 -0.13 -2.07 16 19 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 20 H 0.40 10.91 3.89 -40.82 -0.16 10.75 16 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.02 0.34 5.00 -51.93 -0.26 0.08 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.37 5.54 9.12 45.56 0.42 5.95 16 26 H 0.09 1.91 6.55 -51.93 -0.34 1.57 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.15 6.60 -51.93 -0.34 0.81 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -32.90 257.35 -5.27 -38.17 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.96 Total: 10.13 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.45 Total: -47.03 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.72 Total: -17.37 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.90 -5.27 -38.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700925030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.320 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds