Wall clock time and date at job start Mon Mar 30 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47400 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.53772 * 59.82201 * 11 10 9 13 13 O 1.42907 * 109.47344 * 299.99656 * 12 11 10 14 14 C 1.53174 * 109.54180 * 299.55723 * 11 10 9 15 15 C 1.53088 * 109.16166 * 297.10717 * 14 11 10 16 16 O 1.42897 * 109.41924 * 302.39568 * 15 14 11 17 17 C 1.42904 * 114.09831 * 61.15864 * 16 15 14 18 18 C 1.53101 * 109.41110 * 298.84269 * 17 16 15 19 19 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 20 20 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 21 21 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 22 22 H 1.09001 * 109.47147 * 60.00061 * 10 9 7 23 23 H 1.09005 * 109.47671 * 60.00112 * 12 11 10 24 24 H 1.09000 * 109.46965 * 180.02562 * 12 11 10 25 25 H 0.96699 * 114.00062 * 180.02562 * 13 12 11 26 26 H 1.08995 * 109.52407 * 57.01721 * 14 11 10 27 27 H 1.08997 * 109.52023 * 177.20687 * 14 11 10 28 28 H 1.09000 * 109.48049 * 182.41025 * 15 14 11 29 29 H 1.09005 * 109.49115 * 62.38289 * 15 14 11 30 30 H 1.09000 * 109.48222 * 178.86696 * 17 16 15 31 31 H 1.08995 * 109.49292 * 58.82687 * 17 16 15 32 32 H 1.08995 * 109.52164 * 297.70228 * 18 17 16 33 33 H 1.09000 * 109.51581 * 177.51596 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0636 -4.8198 0.0118 12 6 0.1750 -4.7407 -1.2312 13 8 -0.5403 -3.5035 -1.2275 14 6 0.1948 -4.7434 1.2709 15 6 1.0852 -4.9013 2.5062 16 8 1.7904 -6.1417 2.4280 17 6 2.6552 -6.2509 1.2956 18 6 1.8278 -6.1472 0.0116 19 1 -0.4849 0.8401 0.0004 20 1 0.3555 -2.3880 0.0092 21 1 2.6812 -3.7166 -0.8876 22 1 2.6880 -3.7126 0.8924 23 1 0.7951 -4.7991 -2.1257 24 1 -0.5332 -5.5693 -1.2248 25 1 -1.1254 -3.3852 -1.9882 26 1 -0.3103 -3.7782 1.3069 27 1 -0.5460 -5.5427 1.2513 28 1 0.4668 -4.8906 3.4037 29 1 1.7996 -4.0790 2.5471 30 1 3.1677 -7.2125 1.3210 31 1 3.3901 -5.4464 1.3203 32 1 1.1200 -6.9749 -0.0334 33 1 2.4906 -6.1860 -0.8528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700925030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:06 Heat of formation + Delta-G solvation = -108.920286 kcal Electronic energy + Delta-G solvation = -15651.828885 eV Core-core repulsion = 13097.929586 eV Total energy + Delta-G solvation = -2553.899299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04144 -38.02197 -36.09197 -34.82180 -32.40925 -31.89775 -28.36436 -27.15708 -24.80341 -24.12114 -23.41615 -19.86055 -18.96599 -18.00510 -17.11511 -16.84710 -16.62296 -16.12775 -15.70801 -15.42284 -15.06971 -14.64552 -13.97227 -13.87811 -13.60900 -13.18369 -12.95977 -12.83087 -12.47870 -12.23080 -12.11879 -11.78440 -11.59569 -11.39060 -11.08704 -10.88498 -10.61729 -10.29374 -8.80309 -7.84145 -5.09186 1.46096 1.47879 1.56122 2.59834 2.98109 3.32795 3.44713 3.69317 3.84096 4.09681 4.17363 4.31162 4.35207 4.49113 4.55356 4.62234 4.75729 4.77215 4.80790 4.90270 4.94245 5.00761 5.16068 5.27777 5.34743 5.39557 5.52919 6.27550 6.38365 7.07712 7.47999 8.33368 8.70797 9.38476 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.037665 B = 0.009410 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.208413 B = 2974.737065 C = 3260.811134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.075 4.075 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.161 3.839 11 C -0.069 4.069 12 C 0.092 3.908 13 O -0.570 6.570 14 C -0.127 4.127 15 C 0.064 3.936 16 O -0.394 6.394 17 C 0.054 3.946 18 C -0.132 4.132 19 H 0.247 0.753 20 H 0.396 0.604 21 H 0.007 0.993 22 H 0.012 0.988 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.381 0.619 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.035 0.965 30 H 0.122 0.878 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -14.154 -0.734 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.268 4.268 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.379 5.379 10 C 0.034 3.966 11 C -0.070 4.070 12 C 0.014 3.986 13 O -0.377 6.377 14 C -0.165 4.165 15 C -0.013 4.013 16 O -0.313 6.313 17 C -0.022 4.022 18 C -0.170 4.170 19 H 0.056 0.944 20 H 0.237 0.763 21 H 0.025 0.975 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.230 0.770 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.141 -14.127 -0.041 14.289 hybrid contribution -0.217 1.486 -0.830 1.716 sum 1.925 -12.642 -0.871 12.817 Atomic orbital electron populations 1.69876 1.06257 1.25320 1.59595 1.25457 0.96370 1.00522 1.04416 0.85241 0.77669 0.80168 0.77296 1.21615 1.22188 1.19882 1.19640 0.91065 0.86197 1.40786 0.91850 1.42898 1.07150 0.99704 1.88156 1.20819 0.93362 0.85913 0.96490 1.20884 0.95480 0.95453 0.95152 1.22172 0.93935 0.86172 0.96347 1.86577 1.61996 1.39054 1.50078 1.21954 0.98216 1.01919 0.94442 1.22528 0.94517 0.85746 0.98467 1.87840 1.59940 1.37072 1.46465 1.22777 0.91687 1.03014 0.84712 1.22107 1.00099 0.95372 0.99446 0.94447 0.76347 0.97527 0.97046 0.93796 0.91997 0.77016 0.92784 0.90454 0.88102 0.94664 0.86054 0.93884 0.89158 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.49 13.06 21.65 0.28 -60.21 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 47.86 29.55 68.60 2.03 49.88 16 4 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.24 -14.36 9.99 84.03 0.84 -13.52 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -38.80 4.65 -343.44 -1.60 -40.39 16 10 C 0.16 6.82 4.60 86.38 0.40 7.21 16 11 C -0.07 -2.27 0.51 -52.07 -0.03 -2.29 16 12 C 0.09 2.81 5.93 71.98 0.43 3.24 16 13 O -0.57 -21.95 9.77 -148.98 -1.46 -23.41 16 14 C -0.13 -4.35 4.61 30.68 0.14 -4.21 16 15 C 0.06 2.10 6.57 72.01 0.47 2.57 16 16 O -0.39 -11.85 10.77 -148.98 -1.60 -13.46 16 17 C 0.05 1.36 6.57 72.02 0.47 1.83 16 18 C -0.13 -3.21 4.92 30.68 0.15 -3.05 16 19 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 20 H 0.40 22.01 3.89 -92.71 -0.36 21.64 16 21 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 22 H 0.01 0.51 5.00 -2.39 -0.01 0.50 16 23 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.38 11.48 9.12 -74.06 -0.68 10.80 16 26 H 0.05 2.28 6.55 -2.39 -0.02 2.26 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.04 1.33 6.60 -2.38 -0.02 1.32 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.19 6.61 -2.39 -0.02 1.17 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.52 257.35 1.07 -69.45 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.08 Total: 30.37 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 3.34 Total: -12.24 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -1.31 Total: -100.60 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -3.06 Total: -36.86 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -70.52 1.07 -69.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700925030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.469 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds