Wall clock time and date at job start Mon Mar 30 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.48561 * 111.00001 * 170.00421 * 10 9 7 12 12 C 1.54381 * 104.59192 * 200.96251 * 11 10 9 13 13 H 1.09009 * 110.32087 * 264.94938 * 12 11 10 14 14 C 1.53002 * 110.32654 * 142.84900 * 12 11 10 15 15 O 1.42901 * 109.46939 * 66.45018 * 14 12 11 16 16 C 1.54259 * 105.06400 * 23.84976 * 12 11 10 17 17 H 1.09004 * 110.32414 * 241.11099 * 16 12 11 18 18 C 1.52999 * 110.32378 * 119.00046 * 16 12 11 19 19 O 1.42902 * 109.46861 * 175.00028 * 18 16 12 20 20 C 1.48560 * 110.99867 * 54.58193 * 10 9 7 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 24 24 H 1.09004 * 110.40934 * 319.73472 * 11 10 9 25 25 H 1.08997 * 110.41449 * 82.17970 * 11 10 9 26 26 H 1.08997 * 109.47444 * 186.45162 * 14 12 11 27 27 H 1.09000 * 109.46830 * 306.45180 * 14 12 11 28 28 H 0.96698 * 114.00197 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.46750 * 294.99850 * 18 16 12 30 30 H 1.09000 * 109.47200 * 55.00119 * 18 16 12 31 31 H 0.96702 * 113.99412 * 179.97438 * 19 18 16 32 32 H 1.08998 * 110.41330 * 277.82026 * 20 10 9 33 33 H 1.08997 * 110.40928 * 40.26591 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 1.5143 -4.9075 0.2503 12 6 2.6261 -5.8544 0.7508 13 1 3.0282 -6.4374 -0.0779 14 6 2.0833 -6.7833 1.8386 15 8 1.1149 -7.6673 1.2704 16 6 3.7132 -4.9257 1.3297 17 1 4.6489 -5.0527 0.7852 18 6 3.9218 -5.2147 2.8176 19 8 5.0098 -4.4284 3.3076 20 6 3.1668 -3.4956 1.1304 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5552 0.8979 23 1 0.6206 -2.5586 -0.8820 24 1 0.7452 -4.7875 1.0133 25 1 1.0785 -5.2876 -0.6736 26 1 2.9022 -7.3650 2.2617 27 1 1.6161 -6.1890 2.6239 28 1 0.7272 -8.2860 1.9045 29 1 3.0148 -4.9626 3.3672 30 1 4.1473 -6.2723 2.9542 31 1 5.1989 -4.5606 4.2467 32 1 3.9752 -2.8127 0.8691 33 1 2.6562 -3.1548 2.0311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705290157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:58 Heat of formation + Delta-G solvation = -128.077749 kcal Electronic energy + Delta-G solvation = -15030.060904 eV Core-core repulsion = 12475.330875 eV Total energy + Delta-G solvation = -2554.730029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67130 -37.49330 -37.48234 -35.23028 -33.47283 -30.55253 -29.19293 -26.36650 -25.73009 -23.79154 -21.94607 -20.13533 -18.97962 -18.38536 -17.58682 -17.07119 -16.86116 -16.02847 -15.78033 -15.70423 -14.68620 -14.53131 -14.25942 -13.77745 -13.71144 -13.07191 -12.91100 -12.85799 -12.57969 -12.41375 -12.07254 -11.92507 -11.84285 -11.26557 -11.21966 -11.11441 -10.67557 -10.52715 -9.23908 -8.26127 -6.37202 1.37442 1.41622 1.49702 2.37057 3.06334 3.17740 3.19379 3.47877 3.65486 3.96769 4.05973 4.25528 4.39046 4.39850 4.50797 4.57438 4.58996 4.62244 4.82061 4.98334 4.99131 5.06320 5.19254 5.24786 5.36759 5.57056 5.89363 6.18350 6.45920 6.78132 6.94247 6.99660 7.32854 8.85907 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034230 B = 0.008130 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.791480 B = 3443.114693 C = 4047.853753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.199 3.801 10 N -0.528 5.528 11 C 0.041 3.959 12 C -0.077 4.077 13 H 0.091 0.909 14 C 0.084 3.916 15 O -0.591 6.591 16 C -0.083 4.083 17 H 0.089 0.911 18 C 0.084 3.916 19 O -0.592 6.592 20 C 0.065 3.935 21 H 0.266 0.734 22 H -0.036 1.036 23 H 0.002 0.998 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.398 0.602 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.397 0.603 32 H 0.058 0.942 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -14.061 8.427 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.252 5.252 11 C -0.087 4.087 12 C -0.096 4.096 13 H 0.110 0.890 14 C 0.007 3.993 15 O -0.399 6.399 16 C -0.102 4.102 17 H 0.107 0.893 18 C 0.007 3.993 19 O -0.400 6.400 20 C -0.063 4.063 21 H 0.075 0.925 22 H -0.018 1.018 23 H 0.020 0.980 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.248 0.752 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.247 0.753 32 H 0.076 0.924 33 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.992 -13.393 6.748 16.547 hybrid contribution -0.786 0.729 1.568 1.900 sum 6.206 -12.664 8.316 16.372 Atomic orbital electron populations 1.70087 1.07773 1.28150 1.51266 1.25973 0.95830 1.03384 0.94427 0.85398 0.78200 0.77619 0.79202 1.19231 1.20325 1.19177 1.21462 0.93556 0.91229 1.50960 0.92021 1.19501 0.90594 0.89307 0.93361 1.65361 1.15841 1.02304 1.41649 1.23087 0.95873 0.90359 0.99427 1.21820 0.94018 0.94859 0.98872 0.89032 1.22391 0.91704 0.91338 0.93885 1.86466 1.59543 1.52163 1.41761 1.21901 0.98602 0.93319 0.96390 0.89312 1.22412 0.89137 0.95292 0.92475 1.86491 1.53038 1.68773 1.31729 1.22760 0.95244 0.96642 0.91622 0.92491 1.01848 0.97996 0.95620 0.91380 0.89950 0.93438 0.75234 0.93549 0.89798 0.75317 0.92352 0.96098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.53 -32.11 8.58 25.60 0.22 -31.89 16 8 H 0.06 3.64 6.63 -2.92 -0.02 3.62 16 9 C 0.20 11.50 4.82 85.56 0.41 11.91 16 10 N -0.53 -25.24 5.48 -886.04 -4.86 -30.09 16 11 C 0.04 1.61 5.88 86.45 0.51 2.12 16 12 C -0.08 -2.26 3.34 -9.90 -0.03 -2.29 16 13 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 14 C 0.08 1.82 5.17 71.98 0.37 2.19 16 15 O -0.59 -13.14 13.49 -148.98 -2.01 -15.15 16 16 C -0.08 -2.55 3.32 -9.90 -0.03 -2.58 16 17 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 18 C 0.08 1.94 5.19 71.98 0.37 2.31 16 19 O -0.59 -14.52 13.55 -148.98 -2.02 -16.54 16 20 C 0.07 2.78 4.98 86.45 0.43 3.21 16 21 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 22 H -0.04 -2.23 7.88 -2.39 -0.02 -2.25 16 23 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 24 H 0.03 1.06 7.48 -2.39 -0.02 1.04 16 25 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.08 1.22 6.54 -2.39 -0.02 1.21 16 27 H 0.05 1.03 6.99 -2.39 -0.02 1.01 16 28 H 0.40 4.57 9.12 -74.06 -0.68 3.90 16 29 H 0.05 1.08 7.00 -2.39 -0.02 1.06 16 30 H 0.08 1.31 6.44 -2.39 -0.02 1.29 16 31 H 0.40 5.37 9.12 -74.06 -0.68 4.70 16 32 H 0.06 2.68 7.21 -2.39 -0.02 2.66 16 33 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 Total: -1.00 -74.92 266.30 -4.09 -79.02 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.23 Total: 7.17 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 2.71 Total: -14.42 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -4.57 Total: -87.93 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -4.03 Total: -31.69 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.92 -4.09 -79.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705290157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.060 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds