Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47843 * 110.99832 * 49.15945 * 10 9 7 12 12 C 1.54910 * 104.79751 * 146.36391 * 11 10 9 13 13 H 1.09005 * 111.02202 * 81.02877 * 12 11 10 14 14 C 1.53002 * 110.99108 * 204.83557 * 12 11 10 15 15 O 1.42900 * 109.46948 * 287.26513 * 14 12 11 16 16 C 1.55139 * 101.65102 * 322.92739 * 12 11 10 17 17 H 1.08998 * 110.70977 * 277.27316 * 16 12 11 18 18 C 1.53006 * 110.70647 * 154.03291 * 16 12 11 19 19 O 1.42891 * 109.46942 * 179.97438 * 18 16 12 20 20 C 1.47446 * 110.99663 * 169.99992 * 10 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09001 * 110.37441 * 265.19220 * 11 10 9 25 25 H 1.08998 * 110.37720 * 27.53105 * 11 10 9 26 26 H 1.08995 * 109.46844 * 47.26982 * 14 12 11 27 27 H 1.08992 * 109.46753 * 167.26697 * 14 12 11 28 28 H 0.96695 * 113.99420 * 179.97438 * 15 14 12 29 29 H 1.08996 * 109.47028 * 299.94859 * 18 16 12 30 30 H 1.09001 * 109.46301 * 59.94758 * 18 16 12 31 31 H 0.96711 * 113.99968 * 180.02562 * 19 18 16 32 32 H 1.08997 * 109.89350 * 356.14560 * 20 10 9 33 33 H 1.08996 * 109.88465 * 117.34327 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 3.2360 -3.4319 1.0437 12 6 3.5690 -4.8653 1.5276 13 1 4.2675 -5.3548 0.8488 14 6 4.1180 -4.8480 2.9556 15 8 5.4469 -4.3225 2.9487 16 6 2.1754 -5.5451 1.4761 17 1 1.6039 -5.3213 2.3769 18 6 2.3175 -7.0565 1.2853 19 8 1.0207 -7.6551 1.2423 20 6 1.5185 -4.8982 0.2385 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 4.1227 -2.9580 0.6226 25 1 2.8406 -2.8360 1.8662 26 1 3.4827 -4.2213 3.5815 27 1 4.1308 -5.8631 3.3522 28 1 5.8582 -4.2817 3.8229 29 1 2.8410 -7.2571 0.3506 30 1 2.8843 -7.4759 2.1165 31 1 1.0342 -8.6147 1.1233 32 1 0.4601 -4.7219 0.4301 33 1 1.6375 -5.5496 -0.6273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705290159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = -102.488676 kcal Electronic energy + Delta-G solvation = -14953.473524 eV Core-core repulsion = 12399.853120 eV Total energy + Delta-G solvation = -2553.620403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.06121 -36.61668 -36.16699 -33.22035 -31.54348 -29.42409 -27.03550 -25.20406 -23.98842 -21.68981 -19.97355 -19.71541 -17.37042 -16.97051 -16.40430 -15.39018 -15.07326 -14.66099 -14.20990 -13.98790 -13.26291 -13.07700 -12.76626 -12.16639 -11.95747 -11.58231 -11.26344 -11.00789 -10.84704 -10.71736 -10.47577 -10.33397 -10.23429 -10.01094 -9.71613 -9.69770 -9.04018 -8.43106 -7.13798 -5.99807 -4.01163 3.36131 3.39528 3.43246 4.07696 4.43946 4.47422 4.85699 5.00159 5.13568 5.27566 5.35778 5.37285 5.40978 5.62817 5.76822 5.83343 5.87842 6.08873 6.17903 6.46576 6.61594 6.77069 6.86510 7.29893 7.47250 7.63923 7.70889 7.82698 8.07286 8.27880 8.58944 9.06734 9.63110 11.11493 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.008308 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.047965 B = 3369.623345 C = 4084.463443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.535 5.535 11 C 0.075 3.925 12 C -0.097 4.097 13 H 0.086 0.914 14 C 0.087 3.913 15 O -0.569 6.569 16 C -0.102 4.102 17 H 0.079 0.921 18 C 0.089 3.911 19 O -0.571 6.571 20 C 0.056 3.944 21 H 0.262 0.738 22 H -0.009 1.009 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.374 0.626 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.374 0.626 32 H 0.051 0.949 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 -13.047 6.055 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.259 5.259 11 C -0.052 4.052 12 C -0.116 4.116 13 H 0.104 0.896 14 C 0.009 3.991 15 O -0.373 6.373 16 C -0.122 4.122 17 H 0.097 0.903 18 C 0.011 3.989 19 O -0.375 6.375 20 C -0.073 4.073 21 H 0.071 0.929 22 H 0.009 0.991 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.220 0.780 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.220 0.780 32 H 0.070 0.930 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.119 -12.233 4.979 14.556 hybrid contribution 0.217 0.328 1.356 1.411 sum 6.336 -11.905 6.334 14.900 Atomic orbital electron populations 1.69959 1.06064 1.26845 1.50844 1.24996 0.94858 0.99317 0.95353 0.86567 0.79456 0.82757 0.78693 1.21332 1.20272 1.20112 1.21224 0.93501 0.90208 1.50392 0.91849 1.19917 0.90402 0.87371 0.96062 1.63725 1.14631 1.02378 1.45169 1.22759 0.96146 0.92637 0.93702 1.22369 0.95061 0.98805 0.95358 0.89589 1.22166 0.83364 0.96481 0.97057 1.86533 1.29263 1.87187 1.34356 1.22357 0.96348 0.92775 1.00724 0.90254 1.22187 0.84165 0.93189 0.99386 1.86542 1.29225 1.25148 1.96607 1.22744 0.97330 0.92308 0.94907 0.92883 0.99083 0.95030 0.90766 0.93268 0.93410 0.94204 0.77967 0.93287 0.94139 0.77962 0.93013 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.96 8.35 -34.44 -0.29 -15.24 16 8 H 0.06 1.81 6.67 -52.49 -0.35 1.46 16 9 C 0.19 5.16 4.59 -4.98 -0.02 5.13 16 10 N -0.53 -12.35 5.31 -232.68 -1.24 -13.58 16 11 C 0.08 1.58 4.82 -2.30 -0.01 1.57 16 12 C -0.10 -1.56 2.74 -88.48 -0.24 -1.81 16 13 H 0.09 1.37 8.05 -51.93 -0.42 0.96 16 14 C 0.09 1.18 6.50 37.16 0.24 1.42 16 15 O -0.57 -7.75 13.62 -35.23 -0.48 -8.23 16 16 C -0.10 -1.64 2.70 -88.79 -0.24 -1.88 16 17 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 18 C 0.09 1.12 6.36 37.16 0.24 1.35 16 19 O -0.57 -7.27 13.50 -35.23 -0.48 -7.75 16 20 C 0.06 1.09 6.32 -2.83 -0.02 1.07 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 22 H -0.01 -0.25 7.96 -51.92 -0.41 -0.66 16 23 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 1.63 7.69 -51.93 -0.40 1.23 16 25 H 0.05 1.11 7.32 -51.93 -0.38 0.73 16 26 H 0.05 0.65 7.96 -51.93 -0.41 0.24 16 27 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.37 3.15 9.12 45.56 0.42 3.57 16 29 H 0.05 0.59 8.06 -51.93 -0.42 0.17 16 30 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.37 2.78 9.12 45.56 0.42 3.20 16 32 H 0.05 1.08 7.49 -51.93 -0.39 0.69 16 33 H 0.06 1.20 7.76 -51.93 -0.40 0.80 16 LS Contribution 272.25 15.07 4.10 4.10 Total: -1.00 -33.61 272.25 -6.38 -39.99 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.57 Total: 1.78 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.44 Total: -6.84 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.50 Total: -40.20 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.96 Total: -15.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.61 -6.38 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705290159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.497 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds