Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47843 * 110.99832 * 49.15945 * 10 9 7 12 12 C 1.54910 * 104.79751 * 146.36391 * 11 10 9 13 13 H 1.09005 * 111.02202 * 81.02877 * 12 11 10 14 14 C 1.53002 * 110.99108 * 204.83557 * 12 11 10 15 15 O 1.42900 * 109.46948 * 287.26513 * 14 12 11 16 16 C 1.55139 * 101.65102 * 322.92739 * 12 11 10 17 17 H 1.08998 * 110.70977 * 277.27316 * 16 12 11 18 18 C 1.53006 * 110.70647 * 154.03291 * 16 12 11 19 19 O 1.42891 * 109.46942 * 179.97438 * 18 16 12 20 20 C 1.47446 * 110.99663 * 169.99992 * 10 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09001 * 110.37441 * 265.19220 * 11 10 9 25 25 H 1.08998 * 110.37720 * 27.53105 * 11 10 9 26 26 H 1.08995 * 109.46844 * 47.26982 * 14 12 11 27 27 H 1.08992 * 109.46753 * 167.26697 * 14 12 11 28 28 H 0.96695 * 113.99420 * 179.97438 * 15 14 12 29 29 H 1.08996 * 109.47028 * 299.94859 * 18 16 12 30 30 H 1.09001 * 109.46301 * 59.94758 * 18 16 12 31 31 H 0.96711 * 113.99968 * 180.02562 * 19 18 16 32 32 H 1.08997 * 109.89350 * 356.14560 * 20 10 9 33 33 H 1.08996 * 109.88465 * 117.34327 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 3.2360 -3.4319 1.0437 12 6 3.5690 -4.8653 1.5276 13 1 4.2675 -5.3548 0.8488 14 6 4.1180 -4.8480 2.9556 15 8 5.4469 -4.3225 2.9487 16 6 2.1754 -5.5451 1.4761 17 1 1.6039 -5.3213 2.3769 18 6 2.3175 -7.0565 1.2853 19 8 1.0207 -7.6551 1.2423 20 6 1.5185 -4.8982 0.2385 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 4.1227 -2.9580 0.6226 25 1 2.8406 -2.8360 1.8662 26 1 3.4827 -4.2213 3.5815 27 1 4.1308 -5.8631 3.3522 28 1 5.8582 -4.2817 3.8229 29 1 2.8410 -7.2571 0.3506 30 1 2.8843 -7.4759 2.1165 31 1 1.0342 -8.6147 1.1233 32 1 0.4601 -4.7219 0.4301 33 1 1.6375 -5.5496 -0.6273 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705290159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = -132.900987 kcal Electronic energy + Delta-G solvation = -14954.792300 eV Core-core repulsion = 12399.853120 eV Total energy + Delta-G solvation = -2554.939180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51872 -37.59872 -37.43243 -35.19224 -33.32282 -30.80261 -29.01073 -26.57111 -25.67659 -23.36587 -21.58415 -21.12209 -18.60087 -18.36969 -17.85427 -17.01751 -16.69617 -16.11604 -15.63777 -15.42799 -14.68975 -14.60339 -14.43532 -13.79780 -13.70700 -13.21222 -12.80878 -12.76668 -12.63491 -12.33522 -12.12585 -11.83674 -11.68758 -11.63423 -11.20486 -10.92008 -10.74837 -10.68105 -9.04840 -8.25586 -6.36639 1.37564 1.41808 1.49902 2.37349 3.03238 3.07039 3.27608 3.52483 3.65623 3.89286 4.12073 4.27199 4.32323 4.50585 4.51209 4.57240 4.66710 4.69803 4.87123 4.93425 4.96659 5.07658 5.14491 5.32966 5.36694 5.60193 5.92995 6.24901 6.54824 6.79832 6.96026 6.98747 7.33542 8.86511 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.008308 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.047965 B = 3369.623345 C = 4084.463443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.205 3.795 10 N -0.546 5.546 11 C 0.074 3.926 12 C -0.083 4.083 13 H 0.096 0.904 14 C 0.092 3.908 15 O -0.589 6.589 16 C -0.095 4.095 17 H 0.071 0.929 18 C 0.096 3.904 19 O -0.593 6.593 20 C 0.052 3.948 21 H 0.266 0.734 22 H -0.039 1.039 23 H 0.000 1.000 24 H 0.059 0.941 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.397 0.603 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.398 0.602 32 H 0.028 0.972 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 -14.095 6.917 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.078 3.922 10 N -0.270 5.270 11 C -0.053 4.053 12 C -0.102 4.102 13 H 0.114 0.886 14 C 0.014 3.986 15 O -0.397 6.397 16 C -0.114 4.114 17 H 0.090 0.910 18 C 0.018 3.982 19 O -0.402 6.402 20 C -0.076 4.076 21 H 0.075 0.925 22 H -0.021 1.021 23 H 0.018 0.982 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.247 0.753 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.046 0.954 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.921 -13.324 5.857 16.571 hybrid contribution -0.371 0.605 1.068 1.283 sum 7.550 -12.719 6.926 16.333 Atomic orbital electron populations 1.70094 1.07826 1.28135 1.51292 1.25983 0.95810 1.03417 0.94450 0.85396 0.78185 0.77594 0.79233 1.20411 1.19106 1.19206 1.21508 0.93642 0.91243 1.50894 0.91827 1.19534 0.90448 0.89102 0.93081 1.63597 1.14312 1.02407 1.46690 1.22702 0.94526 0.95905 0.92194 1.22263 0.95459 0.94962 0.97541 0.88599 1.22077 0.83257 0.98508 0.94708 1.86468 1.29157 1.87404 1.36681 1.22271 0.95438 0.95539 0.98161 0.91021 1.22087 0.84513 0.90292 1.01281 1.86480 1.29476 1.27507 1.96746 1.22811 0.96111 0.91104 0.97618 0.92516 1.02103 0.98206 0.92220 0.95763 0.94119 0.90396 0.75287 0.92260 0.90858 0.75153 0.95375 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -32.10 8.35 25.60 0.21 -31.88 16 8 H 0.06 3.73 6.67 -2.91 -0.02 3.71 16 9 C 0.21 11.88 4.59 85.55 0.39 12.27 16 10 N -0.55 -26.08 5.31 -890.07 -4.72 -30.81 16 11 C 0.07 3.17 4.82 86.77 0.42 3.59 16 12 C -0.08 -2.55 2.74 -9.41 -0.03 -2.58 16 13 H 0.10 2.80 8.05 -2.38 -0.02 2.78 16 14 C 0.09 2.24 6.50 71.98 0.47 2.71 16 15 O -0.59 -14.48 13.62 -148.98 -2.03 -16.51 16 16 C -0.09 -2.89 2.70 -9.61 -0.03 -2.91 16 17 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 18 C 0.10 2.09 6.36 71.98 0.46 2.54 16 19 O -0.59 -13.53 13.50 -148.98 -2.01 -15.54 16 20 C 0.05 2.05 6.32 86.65 0.55 2.60 16 21 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 22 H -0.04 -2.41 7.96 -2.38 -0.02 -2.43 16 23 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.06 2.67 7.69 -2.39 -0.02 2.65 16 25 H 0.02 1.13 7.32 -2.39 -0.02 1.12 16 26 H 0.04 1.05 7.96 -2.39 -0.02 1.03 16 27 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.40 5.51 9.12 -74.06 -0.68 4.83 16 29 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 30 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.40 4.64 9.12 -74.05 -0.68 3.96 16 32 H 0.03 1.23 7.49 -2.39 -0.02 1.21 16 33 H 0.08 2.85 7.76 -2.39 -0.02 2.83 16 Total: -1.00 -74.80 272.25 -3.79 -78.59 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -0.25 Total: 7.66 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 2.91 Total: -13.10 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -4.44 Total: -88.91 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -4.04 Total: -32.05 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.80 -3.79 -78.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705290159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.307 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds