Wall clock time and date at job start Mon Mar 30 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.47439 * 111.00085 * 49.15864 * 10 9 7 12 12 C 1.54319 * 107.23539 * 123.25880 * 11 10 9 13 13 H 1.09001 * 110.85248 * 263.83185 * 12 11 10 14 14 C 1.52999 * 110.70753 * 140.66471 * 12 11 10 15 15 O 1.42902 * 109.46991 * 71.39829 * 14 12 11 16 16 C 1.55139 * 103.01890 * 22.28243 * 12 11 10 17 17 H 1.09001 * 111.02642 * 82.44918 * 16 12 11 18 18 C 1.52994 * 110.99278 * 206.25573 * 16 12 11 19 19 O 1.42901 * 109.47420 * 178.71659 * 18 16 12 20 20 C 1.47847 * 110.99921 * 170.00320 * 10 9 7 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.09004 * 109.88844 * 242.66645 * 11 10 9 25 25 H 1.09000 * 109.89030 * 3.84865 * 11 10 9 26 26 H 1.09000 * 109.47035 * 191.39947 * 14 12 11 27 27 H 1.09000 * 109.47129 * 311.40106 * 14 12 11 28 28 H 0.96696 * 113.99857 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47519 * 298.72489 * 18 16 12 30 30 H 1.09003 * 109.46907 * 58.72389 * 18 16 12 31 31 H 0.96702 * 114.00010 * 180.02562 * 19 18 16 32 32 H 1.08995 * 110.37115 * 332.46258 * 20 10 9 33 33 H 1.08995 * 110.37458 * 94.69540 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0010 11 6 3.3282 -3.3776 -1.0419 12 6 4.4285 -3.9629 -1.9520 13 1 4.5739 -3.3401 -2.8346 14 6 4.0894 -5.3992 -2.3555 15 8 3.0011 -5.3894 -3.2815 16 6 5.6864 -3.9305 -1.0445 17 1 5.7138 -4.7964 -0.3830 18 6 6.9640 -3.8433 -1.8817 19 8 8.0986 -3.7854 -1.0148 20 6 5.4593 -2.6256 -0.2412 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6801 -0.8911 23 1 3.8752 -0.6805 0.8888 24 1 2.7602 -4.1853 -0.5803 25 1 2.6637 -2.7409 -1.6259 26 1 4.9596 -5.8604 -2.8224 27 1 3.8077 -5.9686 -1.4698 28 1 2.7320 -6.2684 -3.5815 29 1 7.0400 -4.7226 -2.5214 30 1 6.9329 -2.9460 -2.4997 31 1 8.9453 -3.7284 -1.4784 32 1 5.7755 -1.7609 -0.8246 33 1 5.9988 -2.6619 0.7052 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705290160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:02 Heat of formation + Delta-G solvation = -129.003966 kcal Electronic energy + Delta-G solvation = -14992.933354 eV Core-core repulsion = 12438.163162 eV Total energy + Delta-G solvation = -2554.770192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55163 -37.60231 -37.46249 -35.14087 -33.50292 -30.80721 -29.51745 -26.51871 -25.56468 -23.16012 -21.56687 -21.09695 -18.88264 -18.37264 -17.87311 -17.14621 -16.70878 -16.17802 -15.69604 -15.24935 -14.79837 -14.72057 -14.46531 -14.08055 -13.68465 -13.20771 -13.03498 -12.77046 -12.58350 -12.21286 -11.93227 -11.91511 -11.65457 -11.49264 -11.37235 -10.92722 -10.84013 -10.74707 -9.10541 -8.32563 -6.36401 1.30736 1.33214 1.44971 2.31259 2.99588 3.03214 3.24169 3.48086 3.63243 3.88797 4.13535 4.25844 4.32403 4.49242 4.55443 4.55996 4.59347 4.70013 4.75127 4.84663 4.92582 4.98255 5.17518 5.18820 5.36248 5.46669 5.97758 6.23592 6.56997 6.69403 6.96260 6.97574 7.26766 8.83877 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.029460 B = 0.008924 C = 0.007264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.217977 B = 3136.815202 C = 3853.456052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.526 4.526 8 H 0.040 0.960 9 C 0.167 3.833 10 N -0.543 5.543 11 C 0.067 3.933 12 C -0.099 4.099 13 H 0.076 0.924 14 C 0.093 3.907 15 O -0.595 6.595 16 C -0.079 4.079 17 H 0.094 0.906 18 C 0.093 3.907 19 O -0.588 6.588 20 C 0.049 3.951 21 H 0.268 0.732 22 H -0.014 1.014 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.397 0.603 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.398 0.602 32 H 0.037 0.963 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.839 -9.754 -6.839 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.175 1.175 7 C -0.564 4.564 8 H 0.058 0.942 9 C 0.040 3.960 10 N -0.267 5.267 11 C -0.061 4.061 12 C -0.118 4.118 13 H 0.094 0.906 14 C 0.015 3.985 15 O -0.404 6.404 16 C -0.098 4.098 17 H 0.112 0.888 18 C 0.015 3.985 19 O -0.397 6.397 20 C -0.078 4.078 21 H 0.077 0.923 22 H 0.003 0.997 23 H 0.046 0.954 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.247 0.753 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.248 0.752 32 H 0.055 0.945 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.154 -9.234 -5.787 18.665 hybrid contribution 0.051 0.724 -1.076 1.297 sum 15.206 -8.510 -6.862 18.728 Atomic orbital electron populations 1.70049 1.08083 1.28241 1.52160 1.25879 0.95686 1.03231 0.94095 0.85690 0.79454 0.78483 0.79194 1.19163 1.20184 1.17467 1.21333 0.90999 0.93581 1.50496 0.94214 1.20111 0.94210 0.86952 0.94734 1.63473 1.04074 1.12343 1.46765 1.22566 0.96073 0.96247 0.91174 1.22357 0.94267 0.97562 0.97637 0.90600 1.22140 0.89580 0.94479 0.92269 1.86513 1.53586 1.35985 1.64285 1.22183 0.92690 0.98398 0.96505 0.88802 1.22059 0.84345 1.00960 0.91108 1.86455 1.17719 1.97483 1.37997 1.23078 0.88159 0.96889 0.99712 0.92280 0.99670 0.95433 0.92734 0.94619 0.90492 0.92908 0.75306 0.90811 0.93423 0.75187 0.94480 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 2 C 0.01 0.53 5.47 84.66 0.46 0.99 16 3 Si 0.95 45.72 27.47 68.60 1.88 47.61 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 7 C -0.53 -32.07 8.46 25.60 0.22 -31.85 16 8 H 0.04 2.68 7.12 -2.91 -0.02 2.66 16 9 C 0.17 8.66 3.89 85.55 0.33 8.99 16 10 N -0.54 -24.56 5.31 -890.11 -4.73 -29.28 16 11 C 0.07 2.89 5.31 86.65 0.46 3.35 16 12 C -0.10 -3.05 2.68 -9.61 -0.03 -3.08 16 13 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 14 C 0.09 2.23 6.38 71.98 0.46 2.69 16 15 O -0.60 -15.80 13.60 -148.98 -2.03 -17.82 16 16 C -0.08 -2.17 2.77 -9.41 -0.03 -2.20 16 17 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 18 C 0.09 1.89 6.49 71.98 0.47 2.36 16 19 O -0.59 -11.85 13.51 -148.98 -2.01 -13.86 16 20 C 0.05 1.76 6.06 86.77 0.53 2.28 16 21 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 22 H -0.01 -0.73 7.25 -2.39 -0.02 -0.74 16 23 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 24 H 0.05 2.39 7.68 -2.38 -0.02 2.37 16 25 H 0.04 1.81 6.49 -2.39 -0.02 1.80 16 26 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 27 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 28 H 0.40 6.07 9.12 -74.06 -0.68 5.40 16 29 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.95 16 31 H 0.40 3.88 9.12 -74.06 -0.68 3.20 16 32 H 0.04 1.33 7.47 -2.39 -0.02 1.31 16 33 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -76.10 268.33 -4.01 -80.11 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.30 Total: 10.23 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 2.87 Total: -16.46 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -4.43 Total: -89.79 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -4.04 Total: -31.68 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -76.10 -4.01 -80.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705290160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.897 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds