Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47335 * 2 1 4 4 C 1.50695 * 109.47369 * 239.99941 * 2 1 3 5 5 H 1.08009 * 119.99655 * 274.99698 * 4 2 1 6 6 C 1.37879 * 120.00369 * 94.99490 * 4 2 1 7 7 N 1.31512 * 120.00087 * 184.91994 * 6 4 2 8 8 Si 1.86803 * 119.99775 * 4.91667 * 6 4 2 9 9 H 1.48499 * 109.47101 * 84.83226 * 8 6 4 10 10 H 1.48503 * 109.46879 * 204.83583 * 8 6 4 11 11 H 1.48498 * 109.46890 * 324.83244 * 8 6 4 12 12 N 1.46903 * 109.47087 * 119.99412 * 2 1 3 13 13 C 1.46901 * 111.00171 * 274.99999 * 12 2 1 14 14 H 1.09005 * 109.54072 * 34.82198 * 13 12 2 15 15 C 1.53200 * 109.54297 * 274.56027 * 13 12 2 16 16 C 1.53094 * 109.15001 * 183.15677 * 15 13 12 17 17 O 1.42900 * 109.42165 * 57.60593 * 16 15 13 18 18 C 1.42905 * 114.09830 * 298.83584 * 17 16 15 19 19 C 1.53090 * 109.41603 * 61.15931 * 18 17 16 20 20 H 1.09004 * 109.52205 * 182.42322 * 19 18 17 21 21 O 1.42892 * 109.52133 * 62.29724 * 19 18 17 22 22 H 1.08994 * 109.46905 * 175.03994 * 1 2 3 23 23 H 1.09005 * 109.47441 * 295.04153 * 1 2 3 24 24 H 1.08999 * 109.46799 * 55.03456 * 1 2 3 25 25 H 0.96993 * 119.99810 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99718 * 38.95891 * 12 2 1 27 27 H 1.09003 * 109.53594 * 63.24864 * 15 13 12 28 28 H 1.08994 * 109.51993 * 303.05434 * 15 13 12 29 29 H 1.08998 * 109.47876 * 297.61795 * 16 15 13 30 30 H 1.08999 * 109.47804 * 177.59012 * 16 15 13 31 31 H 1.09002 * 109.48263 * 181.14637 * 18 17 16 32 32 H 1.09001 * 109.47537 * 301.17204 * 18 17 16 33 33 H 0.96708 * 114.00113 * 60.00141 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3134 1.8790 -2.3176 9 1 3.5989 2.3950 -1.7823 10 1 2.1055 2.3989 -3.6930 11 1 1.1984 2.3273 -1.4452 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2228 2.3469 14 1 1.2598 0.9357 2.2901 15 6 3.4170 0.9750 2.3300 16 6 3.5065 1.8670 3.5711 17 8 3.3703 1.0632 4.7447 18 6 2.1223 0.3733 4.8379 19 6 1.9770 -0.5788 3.6480 20 1 1.0071 -1.0742 3.6941 21 8 3.0162 -1.5586 3.6908 22 1 -0.3633 -1.0238 -0.0888 23 1 -0.3634 0.4350 0.9311 24 1 -0.3633 0.5889 -0.8422 25 1 2.9369 -0.1050 -4.2553 26 1 1.4496 -1.4978 1.4101 27 1 3.4765 1.5916 1.4331 28 1 4.2387 0.2590 2.3361 29 1 2.7083 2.6088 3.5438 30 1 4.4721 2.3723 3.5866 31 1 2.0908 -0.1973 5.7661 32 1 1.3061 1.0957 4.8274 33 1 3.0129 -2.1008 4.4915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706969062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -95.213907 kcal Electronic energy + Delta-G solvation = -15389.230763 eV Core-core repulsion = 12835.925818 eV Total energy + Delta-G solvation = -2553.304946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60503 -36.34961 -35.61641 -32.75163 -31.27691 -30.07769 -27.96101 -25.23957 -23.55469 -23.32982 -19.99434 -19.68418 -17.18962 -17.03218 -16.09273 -15.65413 -15.15705 -14.74073 -14.31484 -13.85741 -13.05344 -13.02199 -12.73408 -12.41126 -12.17809 -11.95527 -11.62410 -11.10486 -11.03094 -10.81911 -10.71207 -10.41555 -10.00560 -9.90107 -9.74496 -9.18688 -9.06842 -8.49526 -7.31751 -6.02557 -3.99087 3.28601 3.35406 3.36670 3.88713 4.40603 4.43647 4.74186 4.81161 5.02921 5.15774 5.31778 5.39887 5.46591 5.52467 5.61302 5.86324 5.92241 6.13086 6.23258 6.30428 6.34691 6.59942 6.74942 6.86610 7.12828 7.22162 7.73311 7.86303 8.02975 8.42437 8.71035 9.06352 9.60213 11.11358 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.039917 B = 0.009202 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.279815 B = 3042.207210 C = 3290.012797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.177 3.823 3 H 0.036 0.964 4 C -0.488 4.488 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.658 5.658 13 C 0.092 3.908 14 H 0.043 0.957 15 C -0.140 4.140 16 C 0.060 3.940 17 O -0.377 6.377 18 C 0.032 3.968 19 C 0.071 3.929 20 H 0.056 0.944 21 O -0.534 6.534 22 H 0.049 0.951 23 H 0.017 0.983 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.330 0.670 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 3.814 15.486 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.069 3.931 3 H 0.054 0.946 4 C -0.526 4.526 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.288 5.288 13 C -0.019 4.019 14 H 0.061 0.939 15 C -0.179 4.179 16 C -0.017 4.017 17 O -0.295 6.295 18 C -0.046 4.046 19 C 0.011 3.989 20 H 0.074 0.926 21 O -0.337 6.337 22 H 0.068 0.932 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.771 4.174 14.657 15.343 hybrid contribution -1.427 0.952 0.380 1.757 sum -3.198 5.126 15.037 16.206 Atomic orbital electron populations 1.22672 1.01205 1.00778 0.98452 1.19742 0.89173 0.94708 0.89478 0.94626 1.20851 1.42408 0.95733 0.93653 0.90572 1.24977 0.94897 0.97917 0.95439 1.69889 1.46848 1.35546 1.01688 0.86928 0.78853 0.87011 0.77006 1.20099 1.21547 1.19463 1.60823 1.58071 1.08042 1.01850 1.21534 0.96617 0.94063 0.89658 0.93908 1.22152 0.99366 0.99224 0.97111 1.22678 1.01558 0.92393 0.85034 1.87897 1.36140 1.63105 1.42363 1.23289 0.87275 0.95358 0.98725 1.22635 0.90738 0.89759 0.95750 0.92574 1.86761 1.52786 1.49645 1.44473 0.93196 0.96380 0.93210 0.92723 0.85221 0.91105 0.89345 0.93812 0.88870 0.88933 0.92798 0.78891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 9.14 37.16 0.34 -3.26 16 2 C 0.18 4.19 2.05 -68.87 -0.14 4.05 16 3 H 0.04 0.87 4.33 -51.93 -0.23 0.64 16 4 C -0.49 -13.90 9.19 -34.44 -0.32 -14.22 16 5 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 8 Si 0.87 21.72 26.99 -169.99 -4.59 17.13 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.36 6.82 56.52 0.39 -5.97 16 12 N -0.66 -13.86 5.86 -100.74 -0.59 -14.45 16 13 C 0.09 1.60 2.15 -67.52 -0.15 1.46 16 14 H 0.04 0.73 7.10 -51.93 -0.37 0.36 16 15 C -0.14 -2.46 5.46 -26.58 -0.15 -2.60 16 16 C 0.06 0.86 6.84 37.21 0.25 1.11 16 17 O -0.38 -5.49 10.70 -42.73 -0.46 -5.95 16 18 C 0.03 0.38 6.49 37.20 0.24 0.62 16 19 C 0.07 1.00 3.16 -26.59 -0.08 0.91 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 O -0.53 -8.03 12.54 -42.73 -0.54 -8.56 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.02 0.32 7.38 -51.93 -0.38 -0.06 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.33 6.62 8.11 -39.29 -0.32 6.30 16 27 H 0.07 1.33 7.51 -51.93 -0.39 0.94 16 28 H 0.09 1.73 7.83 -51.93 -0.41 1.32 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.37 3.68 9.08 45.56 0.41 4.09 16 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -32.45 265.76 -5.70 -38.15 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.21 Total: 6.83 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.09 Total: -10.02 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.18 Total: -41.59 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.99 Total: -14.51 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.59 Total: 17.13 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.45 -5.70 -38.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.065 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds