Wall clock time and date at job start Mon Mar 30 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47283 * 2 1 4 4 C 1.50698 * 109.47054 * 239.99803 * 2 1 3 5 5 H 1.08000 * 120.00264 * 245.55788 * 4 2 1 6 6 C 1.37884 * 120.00086 * 65.55464 * 4 2 1 7 7 N 1.31517 * 119.99669 * 5.22980 * 6 4 2 8 8 Si 1.86800 * 120.00057 * 185.22706 * 6 4 2 9 9 H 1.48505 * 109.46903 * 95.00172 * 8 6 4 10 10 H 1.48497 * 109.46919 * 214.99824 * 8 6 4 11 11 H 1.48490 * 109.47211 * 335.00240 * 8 6 4 12 12 N 1.46904 * 109.47123 * 120.00101 * 2 1 3 13 13 C 1.46893 * 110.99835 * 279.44489 * 12 2 1 14 14 H 1.09006 * 109.61727 * 30.72184 * 13 12 2 15 15 C 1.53177 * 109.54613 * 150.94234 * 13 12 2 16 16 C 1.53089 * 109.16789 * 176.84588 * 15 13 12 17 17 O 1.42900 * 109.41352 * 302.39183 * 16 15 13 18 18 C 1.43034 * 114.13348 * 61.16078 * 17 16 15 19 19 C 1.53099 * 109.34414 * 298.88052 * 18 17 16 20 20 H 1.08994 * 109.52230 * 177.51434 * 19 18 17 21 21 O 1.42905 * 109.51588 * 297.63891 * 19 18 17 22 22 H 1.09001 * 109.47417 * 174.97277 * 1 2 3 23 23 H 1.09000 * 109.47394 * 294.97358 * 1 2 3 24 24 H 1.09002 * 109.47623 * 54.97368 * 1 2 3 25 25 H 0.96996 * 119.99842 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99747 * 155.48642 * 12 2 1 27 27 H 1.09005 * 109.51860 * 296.75536 * 15 13 12 28 28 H 1.09000 * 109.52186 * 56.93565 * 15 13 12 29 29 H 1.09003 * 109.47793 * 62.37149 * 16 15 13 30 30 H 1.08994 * 109.48558 * 182.39232 * 16 15 13 31 31 H 1.09002 * 109.56931 * 178.88408 * 18 17 16 32 32 H 1.09003 * 109.46917 * 58.80615 * 18 17 16 33 33 H 0.96692 * 114.00162 * 299.87291 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5771 -1.6379 -1.1339 6 6 1.7962 -0.1764 -2.4795 7 7 1.2240 1.0023 -2.5933 8 14 2.2891 -1.1271 -4.0101 9 1 1.1233 -1.8995 -4.5099 10 1 2.7399 -0.1773 -5.0589 11 1 3.3956 -2.0601 -3.6784 12 7 2.0196 -0.6925 1.1995 13 6 1.9829 0.1934 2.3706 14 1 1.1623 0.9033 2.2669 15 6 1.7807 -0.6417 3.6387 16 6 1.8226 0.2806 4.8599 17 8 3.0682 0.9805 4.8840 18 6 3.2918 1.8158 3.7447 19 6 3.3079 0.9541 2.4794 20 1 3.4341 1.5928 1.6053 21 8 4.3892 0.0224 2.5501 22 1 -0.3634 -1.0237 -0.0901 23 1 -0.3634 0.4339 0.9316 24 1 -0.3634 0.5898 -0.8415 25 1 1.0582 1.3781 -3.4720 26 1 2.9482 -1.0586 1.0518 27 1 0.8140 -1.1435 3.5941 28 1 2.5745 -1.3847 3.7160 29 1 1.0037 0.9977 4.8020 30 1 1.7217 -0.3137 5.7680 31 1 4.2490 2.3267 3.8488 32 1 2.4921 2.5530 3.6722 33 1 5.2604 0.4356 2.6225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706969063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:38 Heat of formation + Delta-G solvation = -102.529487 kcal Electronic energy + Delta-G solvation = -15333.442193 eV Core-core repulsion = 12779.820020 eV Total energy + Delta-G solvation = -2553.622173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.51777 -36.24278 -35.27509 -32.92437 -30.97466 -29.78021 -27.61350 -25.20367 -23.43132 -23.15839 -20.02305 -19.59576 -17.11483 -16.55612 -15.89920 -15.46713 -15.01280 -14.76656 -14.39454 -13.63357 -13.44999 -12.87730 -12.55573 -12.20967 -11.78682 -11.46813 -11.06304 -11.00234 -10.93529 -10.58506 -10.47315 -10.29746 -10.19823 -9.94879 -9.87769 -9.06097 -8.82895 -8.48116 -7.20825 -6.05058 -4.07609 3.30147 3.36833 3.41007 3.96586 4.40077 4.52662 4.97955 5.06662 5.13574 5.25751 5.29544 5.49642 5.61236 5.65449 5.75749 5.97101 6.06383 6.26400 6.36619 6.69144 6.80684 7.06624 7.15777 7.28586 7.44809 7.80488 7.83213 7.93196 8.20117 8.44014 8.72560 9.04815 9.57927 11.04165 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.049831 B = 0.007752 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.761021 B = 3611.029589 C = 3766.788868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.209 3.791 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.098 3.902 14 H 0.079 0.921 15 C -0.139 4.139 16 C 0.061 3.939 17 O -0.380 6.380 18 C 0.033 3.967 19 C 0.042 3.958 20 H 0.064 0.936 21 O -0.549 6.549 22 H 0.035 0.965 23 H 0.007 0.993 24 H 0.064 0.936 25 H 0.260 0.740 26 H 0.345 0.655 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 1.801 11.018 11.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 H 0.020 0.980 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.014 4.014 14 H 0.097 0.903 15 C -0.177 4.177 16 C -0.016 4.016 17 O -0.298 6.298 18 C -0.045 4.045 19 C -0.019 4.019 20 H 0.082 0.918 21 O -0.353 6.353 22 H 0.054 0.946 23 H 0.026 0.974 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.164 0.836 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.515 1.176 11.090 11.255 hybrid contribution 1.166 0.719 -1.363 1.932 sum 2.681 1.894 9.728 10.267 Atomic orbital electron populations 1.21684 0.98319 0.99809 0.98042 1.19127 0.92046 0.92619 0.86077 0.97962 1.21221 1.35482 1.08118 0.90496 0.92134 1.24930 0.95253 0.94767 0.99063 1.69951 1.43496 1.16026 1.23662 0.86528 0.78788 0.79738 0.82631 1.20669 1.21361 1.19841 1.60685 1.30600 1.35727 1.04010 1.21583 0.92676 0.94097 0.93019 0.90336 1.22131 1.03107 0.99017 0.93455 1.22638 0.85599 0.94433 0.98975 1.87895 1.38868 1.61329 1.41751 1.23302 1.01662 0.92620 0.86931 1.23240 0.90564 0.91888 0.96239 0.91834 1.86507 1.16518 1.35502 1.96782 0.94581 0.97421 0.91706 0.93008 0.83609 0.90770 0.90552 0.93656 0.89178 0.89197 0.92615 0.78347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 9.16 37.15 0.34 -2.62 16 2 C 0.21 5.31 2.31 -68.87 -0.16 5.15 16 3 H 0.00 0.07 7.49 -51.93 -0.39 -0.31 16 4 C -0.51 -14.32 8.50 -34.44 -0.29 -14.62 16 5 H 0.06 1.69 7.75 -52.49 -0.41 1.29 16 6 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 7 N -0.89 -25.66 12.00 55.43 0.67 -24.99 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -14.94 6.06 -100.77 -0.61 -15.55 16 13 C 0.10 1.79 2.14 -67.53 -0.14 1.64 16 14 H 0.08 1.48 6.80 -51.93 -0.35 1.13 16 15 C -0.14 -2.21 5.59 -26.59 -0.15 -2.36 16 16 C 0.06 0.82 6.84 37.20 0.25 1.08 16 17 O -0.38 -5.69 10.70 -42.72 -0.46 -6.14 16 18 C 0.03 0.45 6.50 37.21 0.24 0.69 16 19 C 0.04 0.68 3.37 -26.59 -0.09 0.59 16 20 H 0.06 1.12 7.77 -51.93 -0.40 0.72 16 21 O -0.55 -8.89 11.75 -42.72 -0.50 -9.39 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.01 0.15 7.10 -51.93 -0.37 -0.22 16 24 H 0.06 1.71 6.86 -51.93 -0.36 1.36 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.34 7.85 7.22 -39.29 -0.28 7.57 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.32 7.83 -51.93 -0.41 0.91 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.37 4.36 9.08 45.56 0.41 4.77 16 LS Contribution 266.13 15.07 4.01 4.01 Total: -1.00 -30.16 266.13 -6.23 -36.40 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.22 Total: 7.99 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.09 Total: -8.81 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.05 Total: -40.54 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.96 Total: -15.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.16 -6.23 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.134 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds