Wall clock time and date at job start Mon Mar 30 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47283 * 2 1 4 4 C 1.50698 * 109.47054 * 239.99803 * 2 1 3 5 5 H 1.08000 * 120.00264 * 245.55788 * 4 2 1 6 6 C 1.37884 * 120.00086 * 65.55464 * 4 2 1 7 7 N 1.31517 * 119.99669 * 5.22980 * 6 4 2 8 8 Si 1.86800 * 120.00057 * 185.22706 * 6 4 2 9 9 H 1.48505 * 109.46903 * 95.00172 * 8 6 4 10 10 H 1.48497 * 109.46919 * 214.99824 * 8 6 4 11 11 H 1.48490 * 109.47211 * 335.00240 * 8 6 4 12 12 N 1.46904 * 109.47123 * 120.00101 * 2 1 3 13 13 C 1.46893 * 110.99835 * 279.44489 * 12 2 1 14 14 H 1.09006 * 109.61727 * 30.72184 * 13 12 2 15 15 C 1.53177 * 109.54613 * 150.94234 * 13 12 2 16 16 C 1.53089 * 109.16789 * 176.84588 * 15 13 12 17 17 O 1.42900 * 109.41352 * 302.39183 * 16 15 13 18 18 C 1.43034 * 114.13348 * 61.16078 * 17 16 15 19 19 C 1.53099 * 109.34414 * 298.88052 * 18 17 16 20 20 H 1.08994 * 109.52230 * 177.51434 * 19 18 17 21 21 O 1.42905 * 109.51588 * 297.63891 * 19 18 17 22 22 H 1.09001 * 109.47417 * 174.97277 * 1 2 3 23 23 H 1.09000 * 109.47394 * 294.97358 * 1 2 3 24 24 H 1.09002 * 109.47623 * 54.97368 * 1 2 3 25 25 H 0.96996 * 119.99842 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99747 * 155.48642 * 12 2 1 27 27 H 1.09005 * 109.51860 * 296.75536 * 15 13 12 28 28 H 1.09000 * 109.52186 * 56.93565 * 15 13 12 29 29 H 1.09003 * 109.47793 * 62.37149 * 16 15 13 30 30 H 1.08994 * 109.48558 * 182.39232 * 16 15 13 31 31 H 1.09002 * 109.56931 * 178.88408 * 18 17 16 32 32 H 1.09003 * 109.46917 * 58.80615 * 18 17 16 33 33 H 0.96692 * 114.00162 * 299.87291 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5771 -1.6379 -1.1339 6 6 1.7962 -0.1764 -2.4795 7 7 1.2240 1.0023 -2.5933 8 14 2.2891 -1.1271 -4.0101 9 1 1.1233 -1.8995 -4.5099 10 1 2.7399 -0.1773 -5.0589 11 1 3.3956 -2.0601 -3.6784 12 7 2.0196 -0.6925 1.1995 13 6 1.9829 0.1934 2.3706 14 1 1.1623 0.9033 2.2669 15 6 1.7807 -0.6417 3.6387 16 6 1.8226 0.2806 4.8599 17 8 3.0682 0.9805 4.8840 18 6 3.2918 1.8158 3.7447 19 6 3.3079 0.9541 2.4794 20 1 3.4341 1.5928 1.6053 21 8 4.3892 0.0224 2.5501 22 1 -0.3634 -1.0237 -0.0901 23 1 -0.3634 0.4339 0.9316 24 1 -0.3634 0.5898 -0.8415 25 1 1.0582 1.3781 -3.4720 26 1 2.9482 -1.0586 1.0518 27 1 0.8140 -1.1435 3.5941 28 1 2.5745 -1.3847 3.7160 29 1 1.0037 0.9977 4.8020 30 1 1.7217 -0.3137 5.7680 31 1 4.2490 2.3267 3.8488 32 1 2.4921 2.5530 3.6722 33 1 5.2604 0.4356 2.6225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706969063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:38 Heat of formation + Delta-G solvation = -126.522231 kcal Electronic energy + Delta-G solvation = -15334.482597 eV Core-core repulsion = 12779.820020 eV Total energy + Delta-G solvation = -2554.662576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.78112 -37.71036 -36.79092 -34.75724 -32.63917 -31.06276 -29.33228 -27.29471 -24.84014 -24.37765 -21.78707 -21.13355 -18.63777 -18.19158 -17.27635 -16.96347 -16.48855 -16.25686 -15.76029 -15.30660 -15.10154 -14.39158 -14.02534 -13.80706 -13.49432 -12.88445 -12.85049 -12.69297 -12.59754 -12.35132 -12.17245 -12.11099 -11.80654 -11.54136 -11.13161 -10.93500 -10.60118 -10.25898 -8.98749 -8.18167 -6.28216 1.39680 1.41228 1.51818 2.40153 2.89001 3.13387 3.22293 3.74991 3.77613 3.87747 3.95160 4.25887 4.41795 4.54882 4.63017 4.64290 4.73838 4.79055 5.00463 5.03936 5.08924 5.15978 5.30440 5.48376 5.67409 5.79576 6.15637 6.19348 6.49984 6.75748 6.88851 7.00934 7.41796 8.90506 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.049831 B = 0.007752 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.761021 B = 3611.029589 C = 3766.788868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.216 3.784 3 H -0.027 1.027 4 C -0.536 4.536 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.680 5.680 13 C 0.089 3.911 14 H 0.072 0.928 15 C -0.130 4.130 16 C 0.062 3.938 17 O -0.389 6.389 18 C 0.039 3.961 19 C 0.046 3.954 20 H 0.043 0.957 21 O -0.565 6.565 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.263 0.737 26 H 0.338 0.662 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 1.698 11.905 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.574 4.574 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.310 5.310 13 C -0.022 4.022 14 H 0.090 0.910 15 C -0.168 4.168 16 C -0.015 4.015 17 O -0.308 6.308 18 C -0.039 4.039 19 C -0.015 4.015 20 H 0.061 0.939 21 O -0.372 6.372 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.156 0.844 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.814 1.079 12.003 12.187 hybrid contribution 1.096 0.759 -1.604 2.086 sum 2.909 1.838 10.398 10.953 Atomic orbital electron populations 1.21505 0.97755 0.99151 0.98247 1.18915 0.92393 0.90979 0.87000 1.00947 1.21511 1.35860 1.08118 0.91923 0.92872 1.25704 0.95190 0.95572 1.01946 1.70057 1.44126 1.17171 1.24439 0.85523 0.78572 0.78487 0.78933 1.20112 1.20710 1.19407 1.60643 1.30075 1.36408 1.03849 1.21716 0.93857 0.94154 0.92484 0.91020 1.22051 1.02632 0.98856 0.93303 1.22747 0.85684 0.94473 0.98560 1.87894 1.39522 1.61507 1.41857 1.23326 1.03576 0.92001 0.85008 1.23050 0.89659 0.91579 0.97176 0.93875 1.86455 1.17679 1.36209 1.96838 0.95034 0.95128 0.93964 0.92816 0.84396 0.90547 0.91967 0.92207 0.86764 0.86618 0.91566 0.76149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 9.16 71.98 0.66 -4.70 16 2 C 0.22 11.15 2.31 44.17 0.10 11.25 16 3 H -0.03 -1.54 7.49 -2.39 -0.02 -1.55 16 4 C -0.54 -30.22 8.50 25.60 0.22 -30.01 16 5 H 0.05 3.01 7.75 -2.91 -0.02 2.99 16 6 C 0.02 0.85 5.29 84.66 0.45 1.30 16 7 N -0.92 -53.36 12.00 21.45 0.26 -53.10 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.68 -30.13 6.06 -472.72 -2.87 -32.99 16 13 C 0.09 3.20 2.14 45.03 0.10 3.30 16 14 H 0.07 2.66 6.80 -2.38 -0.02 2.65 16 15 C -0.13 -3.96 5.59 30.68 0.17 -3.79 16 16 C 0.06 1.52 6.84 72.01 0.49 2.01 16 17 O -0.39 -10.56 10.70 -141.82 -1.52 -12.08 16 18 C 0.04 0.96 6.50 72.02 0.47 1.43 16 19 C 0.05 1.48 3.37 30.69 0.10 1.59 16 20 H 0.04 1.55 7.77 -2.39 -0.02 1.53 16 21 O -0.56 -17.81 11.75 -141.82 -1.67 -19.48 16 22 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.03 1.32 7.10 -2.39 -0.02 1.30 16 24 H 0.04 2.25 6.86 -2.39 -0.02 2.24 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.34 15.62 7.22 -89.70 -0.65 14.97 16 27 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.06 2.07 7.83 -2.39 -0.02 2.05 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.39 8.65 9.08 -74.06 -0.67 7.98 16 Total: -1.00 -63.94 266.13 -1.22 -65.16 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.21 Total: 23.90 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 2.76 Total: -17.61 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.61 Total: -86.10 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -3.18 Total: -31.55 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -63.94 -1.22 -65.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.361 kcal (2) G-P(sol) polarization free energy of solvation -63.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds