Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99906 * 2 1 4 4 H 1.48498 * 109.47492 * 240.00447 * 3 2 1 5 5 H 1.48508 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47250 * 120.00022 * 3 2 1 7 7 C 1.37878 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99693 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46770 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47021 * 179.97438 * 10 9 7 12 12 C 1.46906 * 111.00122 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.60990 * 34.78061 * 12 11 10 14 14 C 1.53184 * 109.59446 * 274.58434 * 12 11 10 15 15 C 1.53097 * 109.20994 * 183.21691 * 14 12 11 16 16 O 1.42904 * 109.41619 * 57.57643 * 15 14 12 17 17 C 1.42905 * 114.09465 * 298.84348 * 16 15 14 18 18 C 1.53091 * 109.41853 * 61.15689 * 17 16 15 19 19 H 1.09002 * 109.52401 * 182.48432 * 18 17 16 20 20 O 1.42901 * 109.52101 * 62.36090 * 18 17 16 21 21 H 0.97002 * 120.00784 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47365 * 60.00490 * 9 7 2 23 23 H 1.09003 * 109.47010 * 299.99662 * 9 7 2 24 24 H 1.08996 * 109.47777 * 59.99978 * 10 9 7 25 25 H 1.09001 * 109.47255 * 299.99228 * 10 9 7 26 26 H 1.00901 * 110.99966 * 303.95362 * 11 10 9 27 27 H 1.08996 * 109.52917 * 63.28063 * 14 12 11 28 28 H 1.09000 * 109.52363 * 303.15088 * 14 12 11 29 29 H 1.08999 * 109.47955 * 297.59054 * 15 14 12 30 30 H 1.09003 * 109.48003 * 177.55831 * 15 14 12 31 31 H 1.08998 * 109.47786 * 301.17107 * 17 16 15 32 32 H 1.08996 * 109.47708 * 181.14082 * 17 16 15 33 33 H 0.96698 * 114.00169 * 60.12672 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 2.4356 -6.0758 -0.0005 13 1 3.3216 -5.8293 0.5845 14 6 2.8475 -6.4026 -1.4393 15 6 3.7462 -7.6420 -1.4369 16 8 3.0506 -8.7320 -0.8284 17 6 2.6832 -8.5021 0.5334 18 6 1.7418 -7.2973 0.6101 19 1 1.4955 -7.0933 1.6522 20 8 0.5445 -7.5797 -0.1171 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 2.8721 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8906 26 1 0.8749 -4.9841 0.7817 27 1 3.3920 -5.5587 -1.8630 28 1 1.9576 -6.5991 -2.0373 29 1 4.6551 -7.4308 -0.8735 30 1 4.0067 -7.9041 -2.4624 31 1 3.5782 -8.3023 1.1226 32 1 2.1779 -9.3839 0.9272 33 1 0.0539 -8.3442 0.2146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706969143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -105.113258 kcal Electronic energy + Delta-G solvation = -14747.122985 eV Core-core repulsion = 12193.388771 eV Total energy + Delta-G solvation = -2553.734214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.74341 -36.34725 -35.53470 -33.13920 -31.37311 -30.21534 -28.38651 -24.79140 -23.51054 -22.91820 -20.47566 -19.88667 -17.27327 -16.57889 -16.12540 -15.88368 -15.33215 -14.92220 -14.43277 -14.06445 -13.56197 -13.22680 -12.92978 -12.57424 -12.06494 -11.91773 -11.44605 -11.13758 -10.97577 -10.91592 -10.54939 -10.40599 -10.14650 -9.94323 -9.50683 -9.24807 -9.08719 -8.33894 -7.76927 -5.98142 -4.01139 3.33926 3.38306 3.40538 3.75451 4.22059 4.43329 4.58423 4.66657 4.85233 4.98187 5.23212 5.31584 5.37413 5.37830 5.46361 5.63924 5.70111 5.94530 6.08986 6.32014 6.38798 6.59097 6.99822 7.07898 7.50435 7.72205 7.76175 7.85698 7.98979 8.11440 8.44898 9.06031 9.62451 11.13240 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061394 B = 0.005603 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.961518 B = 4995.982333 C = 5243.081124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.675 5.675 12 C 0.094 3.906 13 H 0.048 0.952 14 C -0.140 4.140 15 C 0.061 3.939 16 O -0.376 6.376 17 C 0.032 3.968 18 C 0.070 3.930 19 H 0.059 0.941 20 O -0.536 6.536 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.338 0.662 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -16.162 1.709 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.307 5.307 12 C -0.017 4.017 13 H 0.066 0.934 14 C -0.179 4.179 15 C -0.016 4.016 16 O -0.294 6.294 17 C -0.046 4.046 18 C 0.010 3.990 19 H 0.077 0.923 20 O -0.339 6.339 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.465 -15.674 0.583 16.609 hybrid contribution 0.712 0.817 1.491 1.843 sum 6.177 -14.856 2.074 16.222 Atomic orbital electron populations 1.69961 1.06041 1.26707 1.50495 1.25001 0.94834 0.99191 0.95289 0.86647 0.79562 0.83136 0.78563 1.20216 1.21240 1.20329 1.21140 0.92905 0.91064 1.51088 0.92863 1.19052 0.93992 0.90321 0.97763 1.22241 0.96993 0.88702 0.98389 1.60475 1.18993 1.01150 1.50044 1.21525 0.94002 0.89894 0.96249 0.93417 1.22144 1.00991 0.97243 0.97503 1.22665 0.93612 0.87031 0.98323 1.87915 1.76590 1.39799 1.25145 1.23288 0.98241 0.98629 0.84454 1.22632 0.86384 0.95030 0.94976 0.92317 1.86725 1.36212 1.52176 1.58832 0.92917 0.95562 0.96870 0.96904 0.92385 0.84345 0.90915 0.89485 0.93620 0.88754 0.92612 0.88746 0.78552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.28 55.43 0.74 -26.59 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 10 C 0.06 1.40 5.43 -3.82 -0.02 1.38 16 11 N -0.68 -12.70 6.13 -106.52 -0.65 -13.35 16 12 C 0.09 1.42 2.36 -67.52 -0.16 1.27 16 13 H 0.05 0.71 7.80 -51.93 -0.41 0.30 16 14 C -0.14 -2.07 5.47 -26.59 -0.15 -2.21 16 15 C 0.06 0.73 6.84 37.21 0.25 0.99 16 16 O -0.38 -4.87 10.70 -42.66 -0.46 -5.33 16 17 C 0.03 0.33 6.49 37.20 0.24 0.58 16 18 C 0.07 0.87 3.15 -26.59 -0.08 0.78 16 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 20 O -0.54 -7.25 12.55 -42.66 -0.54 -7.78 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 25 H 0.06 1.26 7.54 -51.93 -0.39 0.87 16 26 H 0.34 6.23 8.37 -39.29 -0.33 5.90 16 27 H 0.07 1.09 7.58 -51.93 -0.39 0.70 16 28 H 0.09 1.46 7.84 -51.93 -0.41 1.06 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.37 3.24 9.08 45.56 0.41 3.66 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -32.67 272.39 -6.73 -39.39 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.43 Total: 3.18 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -0.47 Total: -10.48 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.08 Total: -39.94 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.99 Total: -13.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.67 -6.73 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.719 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds