Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 119.99906 * 2 1 4 4 H 1.48498 * 109.47492 * 240.00447 * 3 2 1 5 5 H 1.48508 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47250 * 120.00022 * 3 2 1 7 7 C 1.37878 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99693 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46770 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47021 * 179.97438 * 10 9 7 12 12 C 1.46906 * 111.00122 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.60990 * 34.78061 * 12 11 10 14 14 C 1.53184 * 109.59446 * 274.58434 * 12 11 10 15 15 C 1.53097 * 109.20994 * 183.21691 * 14 12 11 16 16 O 1.42904 * 109.41619 * 57.57643 * 15 14 12 17 17 C 1.42905 * 114.09465 * 298.84348 * 16 15 14 18 18 C 1.53091 * 109.41853 * 61.15689 * 17 16 15 19 19 H 1.09002 * 109.52401 * 182.48432 * 18 17 16 20 20 O 1.42901 * 109.52101 * 62.36090 * 18 17 16 21 21 H 0.97002 * 120.00784 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47365 * 60.00490 * 9 7 2 23 23 H 1.09003 * 109.47010 * 299.99662 * 9 7 2 24 24 H 1.08996 * 109.47777 * 59.99978 * 10 9 7 25 25 H 1.09001 * 109.47255 * 299.99228 * 10 9 7 26 26 H 1.00901 * 110.99966 * 303.95362 * 11 10 9 27 27 H 1.08996 * 109.52917 * 63.28063 * 14 12 11 28 28 H 1.09000 * 109.52363 * 303.15088 * 14 12 11 29 29 H 1.08999 * 109.47955 * 297.59054 * 15 14 12 30 30 H 1.09003 * 109.48003 * 177.55831 * 15 14 12 31 31 H 1.08998 * 109.47786 * 301.17107 * 17 16 15 32 32 H 1.08996 * 109.47708 * 181.14082 * 17 16 15 33 33 H 0.96698 * 114.00169 * 60.12672 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 2.4356 -6.0758 -0.0005 13 1 3.3216 -5.8293 0.5845 14 6 2.8475 -6.4026 -1.4393 15 6 3.7462 -7.6420 -1.4369 16 8 3.0506 -8.7320 -0.8284 17 6 2.6832 -8.5021 0.5334 18 6 1.7418 -7.2973 0.6101 19 1 1.4955 -7.0933 1.6522 20 8 0.5445 -7.5797 -0.1171 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 2.8721 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8906 26 1 0.8749 -4.9841 0.7817 27 1 3.3920 -5.5587 -1.8630 28 1 1.9576 -6.5991 -2.0373 29 1 4.6551 -7.4308 -0.8735 30 1 4.0067 -7.9041 -2.4624 31 1 3.5782 -8.3023 1.1226 32 1 2.1779 -9.3839 0.9272 33 1 0.0539 -8.3442 0.2146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706969143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = -131.784879 kcal Electronic energy + Delta-G solvation = -14748.279553 eV Core-core repulsion = 12193.388771 eV Total energy + Delta-G solvation = -2554.890782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.75728 -37.56373 -36.81285 -35.13069 -32.93632 -31.29195 -30.04722 -26.52191 -24.53458 -24.36027 -22.33272 -21.01063 -18.54944 -18.23698 -17.41313 -17.03994 -16.55306 -16.29289 -16.01124 -15.43371 -15.06171 -14.49320 -14.31167 -14.03686 -13.70550 -13.23329 -13.06109 -12.80330 -12.48971 -12.41655 -12.06177 -11.89291 -11.54827 -11.42382 -11.21539 -11.09904 -10.57696 -10.25164 -9.27384 -8.21270 -6.33825 1.39609 1.43375 1.51397 2.39663 2.89238 3.11548 3.12427 3.45703 3.75288 3.85183 3.93219 4.21584 4.35401 4.43665 4.48954 4.56587 4.61443 4.66142 4.73368 4.87875 5.03049 5.04626 5.35771 5.43354 5.64303 5.76927 6.11938 6.19951 6.27727 6.52221 6.83393 6.99087 7.35760 8.90885 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061394 B = 0.005603 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.961518 B = 4995.982333 C = 5243.081124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.085 3.915 11 N -0.687 5.687 12 C 0.085 3.915 13 H 0.059 0.941 14 C -0.138 4.138 15 C 0.066 3.934 16 O -0.392 6.392 17 C 0.033 3.967 18 C 0.072 3.928 19 H 0.075 0.925 20 O -0.563 6.563 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.010 1.010 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.338 0.662 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -16.778 2.378 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.044 4.044 11 N -0.318 5.318 12 C -0.024 4.024 13 H 0.077 0.923 14 C -0.177 4.177 15 C -0.011 4.011 16 O -0.310 6.310 17 C -0.045 4.045 18 C 0.012 3.988 19 H 0.093 0.907 20 O -0.370 6.370 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.157 0.843 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 7.132 -16.327 1.259 17.862 hybrid contribution 0.130 0.957 1.283 1.605 sum 7.262 -15.371 2.542 17.189 Atomic orbital electron populations 1.70108 1.07951 1.27951 1.51251 1.26015 0.95769 1.03517 0.94489 0.85438 0.78209 0.77746 0.79249 1.19144 1.20757 1.18954 1.21585 0.93558 0.92189 1.51229 0.92009 1.18903 0.94291 0.92436 0.94849 1.21837 0.95532 0.88426 0.98589 1.60382 1.19852 1.01216 1.50357 1.21705 0.94013 0.89690 0.97029 0.92348 1.22101 1.00342 0.98472 0.96738 1.22673 0.93329 0.85523 0.99598 1.87900 1.76746 1.39914 1.26475 1.23451 0.98638 0.98713 0.83655 1.22638 0.86455 0.94579 0.95126 0.90749 1.86669 1.36991 1.53612 1.59739 0.92688 0.99171 0.99135 0.96097 0.92577 0.84323 0.91837 0.92233 0.91777 0.87514 0.90905 0.86052 0.76290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.28 21.45 0.28 -57.85 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.81 5.23 29.85 0.16 1.96 16 10 C 0.08 3.70 5.43 86.30 0.47 4.17 16 11 N -0.69 -25.97 6.13 -490.93 -3.01 -28.98 16 12 C 0.09 2.50 2.36 45.03 0.11 2.60 16 13 H 0.06 1.60 7.80 -2.39 -0.02 1.59 16 14 C -0.14 -3.98 5.47 30.69 0.17 -3.82 16 15 C 0.07 1.45 6.84 72.01 0.49 1.95 16 16 O -0.39 -9.17 10.70 -141.88 -1.52 -10.69 16 17 C 0.03 0.59 6.49 72.01 0.47 1.05 16 18 C 0.07 1.64 3.15 30.68 0.10 1.74 16 19 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 20 O -0.56 -14.59 12.55 -141.88 -1.78 -16.38 16 21 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 22 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H 0.02 0.87 8.06 -2.39 -0.02 0.85 16 25 H 0.06 2.45 7.54 -2.39 -0.02 2.43 16 26 H 0.34 12.59 8.37 -89.69 -0.75 11.84 16 27 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 28 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.39 6.20 9.08 -74.06 -0.67 5.53 16 Total: -1.00 -70.85 272.39 -1.67 -72.52 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.32 Total: 16.21 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 2.65 Total: -21.55 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.72 Total: -86.83 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -3.30 Total: -27.06 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.85 -1.67 -72.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.265 kcal (2) G-P(sol) polarization free energy of solvation -70.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds