Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99800 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.53961 * 35.17656 * 12 11 10 14 14 C 1.53174 * 109.54427 * 275.00150 * 12 11 10 15 15 C 1.53088 * 109.16450 * 183.15281 * 14 12 11 16 16 O 1.42901 * 109.41823 * 57.60456 * 15 14 12 17 17 C 1.42902 * 114.09782 * 298.84469 * 16 15 14 18 18 C 1.53098 * 109.41355 * 61.15353 * 17 16 15 19 19 H 1.08997 * 109.52060 * 62.30118 * 18 17 16 20 20 O 1.42900 * 109.51847 * 182.48377 * 18 17 16 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.00891 * 111.00138 * 56.04633 * 11 10 9 27 27 H 1.09000 * 109.52025 * 303.05826 * 14 12 11 28 28 H 1.09004 * 109.52492 * 63.24130 * 14 12 11 29 29 H 1.08994 * 109.48102 * 177.58815 * 15 14 12 30 30 H 1.09006 * 109.48108 * 297.61154 * 15 14 12 31 31 H 1.08997 * 109.48568 * 181.13597 * 17 16 15 32 32 H 1.09001 * 109.48054 * 301.16156 * 17 16 15 33 33 H 0.96699 * 114.00913 * 299.68665 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 1 3.3174 -5.8311 0.5901 14 6 2.8556 -6.3942 -1.4400 15 6 3.7555 -7.6326 -1.4382 16 8 3.0572 -8.7265 -0.8398 17 6 2.6808 -8.5042 0.5207 18 6 1.7377 -7.3006 0.5975 19 1 0.8287 -7.5137 0.0349 20 8 1.4057 -7.0407 1.9629 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6043 -0.8905 25 1 2.8721 -3.6042 0.8895 26 1 0.8748 -4.9841 -0.7827 27 1 1.9693 -6.5888 -2.0438 28 1 3.4019 -5.5475 -1.8557 29 1 4.0229 -7.8892 -2.4632 30 1 4.6607 -7.4235 -0.8680 31 1 2.1738 -9.3885 0.9068 32 1 3.5717 -8.3067 1.1167 33 1 0.9600 -7.7755 2.4062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706969153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -134.251078 kcal Electronic energy + Delta-G solvation = -14689.699873 eV Core-core repulsion = 12134.702148 eV Total energy + Delta-G solvation = -2554.997724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76158 -37.66775 -37.09454 -35.18869 -32.98420 -31.07271 -30.00750 -26.50624 -24.53153 -24.19753 -22.55872 -21.31559 -18.55731 -18.36510 -17.34602 -17.19617 -16.53318 -16.39289 -15.94670 -15.56650 -14.90765 -14.51442 -14.22563 -13.96442 -13.67838 -13.19637 -13.11814 -12.89626 -12.62439 -12.49423 -12.30391 -11.90413 -11.61498 -11.39130 -11.36380 -11.07721 -10.57693 -10.38791 -9.23889 -8.21379 -6.33703 1.39511 1.43333 1.51331 2.39715 2.75930 3.11747 3.19037 3.33143 3.76156 3.84004 4.02576 4.16579 4.18322 4.35294 4.44107 4.53075 4.60256 4.68884 4.75410 4.88050 4.98427 5.03555 5.08739 5.41903 5.64482 5.76466 6.09893 6.11263 6.24272 6.50302 6.83151 6.98443 7.35709 8.90820 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.005682 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.504031 B = 4926.778788 C = 5196.106892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.088 3.912 11 N -0.685 5.685 12 C 0.086 3.914 13 H 0.069 0.931 14 C -0.178 4.178 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.036 3.964 18 C 0.088 3.912 19 H 0.060 0.940 20 O -0.567 6.567 21 H 0.265 0.735 22 H -0.008 1.008 23 H -0.010 1.010 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.337 0.663 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -16.973 -1.454 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.041 4.041 11 N -0.315 5.315 12 C -0.024 4.024 13 H 0.087 0.913 14 C -0.218 4.218 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.041 4.041 18 C 0.028 3.972 19 H 0.077 0.923 20 O -0.374 6.374 21 H 0.073 0.927 22 H 0.011 0.989 23 H 0.008 0.992 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.155 0.845 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.629 -16.456 -0.992 17.769 hybrid contribution 0.094 0.862 -0.578 1.042 sum 6.724 -15.594 -1.571 17.054 Atomic orbital electron populations 1.70110 1.07911 1.27948 1.51261 1.26009 0.95787 1.03487 0.94482 0.85437 0.78219 0.77763 0.79228 1.18937 1.20686 1.19229 1.21579 0.93529 0.92227 1.51230 0.92114 1.18904 0.94287 0.92377 0.94897 1.21761 0.95558 0.88310 0.98424 1.60487 1.19741 1.01446 1.49820 1.21710 0.94905 0.90528 0.95282 0.91250 1.22915 1.01915 1.00079 0.96858 1.22685 0.93384 0.85217 1.00052 1.87911 1.76423 1.40148 1.26346 1.23415 0.98526 0.98652 0.83525 1.22393 0.97358 0.93839 0.83598 0.92251 1.86673 1.81390 1.45224 1.24095 0.92678 0.98933 0.99184 0.95835 0.93140 0.84477 0.90550 0.90351 0.86575 0.92143 0.86161 0.92161 0.76084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.82 5.23 29.85 0.16 1.98 16 10 C 0.09 3.89 5.43 86.31 0.47 4.36 16 11 N -0.69 -25.87 6.18 -490.94 -3.04 -28.90 16 12 C 0.09 2.55 2.23 45.03 0.10 2.65 16 13 H 0.07 2.20 7.81 -2.39 -0.02 2.19 16 14 C -0.18 -4.26 5.39 30.68 0.17 -4.10 16 15 C 0.06 1.23 6.84 72.01 0.49 1.73 16 16 O -0.39 -8.43 10.77 -148.98 -1.60 -10.03 16 17 C 0.04 0.70 6.47 72.01 0.47 1.17 16 18 C 0.09 2.20 3.31 30.68 0.10 2.30 16 19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 20 O -0.57 -15.32 13.25 -148.98 -1.97 -17.29 16 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 22 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 23 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 24 H 0.02 0.98 7.51 -2.39 -0.02 0.97 16 25 H 0.05 2.29 8.06 -2.39 -0.02 2.27 16 26 H 0.34 12.29 8.44 -89.70 -0.76 11.54 16 27 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 28 H 0.08 1.93 7.55 -2.39 -0.02 1.91 16 29 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.39 6.28 9.09 -74.06 -0.67 5.61 16 Total: -1.00 -70.33 273.39 -1.99 -72.32 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.33 Total: 16.14 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.65 Total: -21.28 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -2.75 Total: -86.74 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -3.58 Total: -27.33 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.33 -1.99 -72.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.933 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds