Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47205 * 179.72079 * 3 2 1 5 5 H 1.48496 * 109.46959 * 299.72245 * 3 2 1 6 6 H 1.48504 * 109.47020 * 59.72471 * 3 2 1 7 7 C 1.38818 * 119.99887 * 179.72111 * 2 1 3 8 8 H 1.08000 * 119.99531 * 162.76734 * 7 2 1 9 9 N 1.36931 * 119.99918 * 342.76572 * 7 2 1 10 10 C 1.46922 * 120.63190 * 332.17435 * 9 7 2 11 11 C 1.52767 * 109.00727 * 233.58234 * 10 9 7 12 12 C 1.53042 * 109.38158 * 305.58661 * 11 10 9 13 13 C 1.53038 * 109.53777 * 61.23943 * 12 11 10 14 14 H 1.09006 * 109.50056 * 58.58935 * 13 12 11 15 15 C 1.53005 * 109.52684 * 178.66596 * 13 12 11 16 16 O 1.42903 * 109.46803 * 294.85554 * 15 13 12 17 17 C 1.46931 * 120.62864 * 152.44889 * 9 7 2 18 18 H 1.09004 * 109.58393 * 6.44240 * 17 9 7 19 19 C 1.52997 * 109.58853 * 246.15647 * 17 9 7 20 20 O 1.42902 * 109.46987 * 65.00192 * 19 17 9 21 21 H 0.97001 * 119.99902 * 0.28128 * 1 2 3 22 22 H 1.08994 * 109.58873 * 353.41342 * 10 9 7 23 23 H 1.08999 * 109.59031 * 113.84742 * 10 9 7 24 24 H 1.08995 * 109.56595 * 185.55346 * 11 10 9 25 25 H 1.09004 * 109.38641 * 65.50963 * 11 10 9 26 26 H 1.08998 * 109.46455 * 301.21804 * 12 11 10 27 27 H 1.09002 * 109.46251 * 181.25777 * 12 11 10 28 28 H 1.09002 * 109.46921 * 54.85051 * 15 13 12 29 29 H 1.09000 * 109.47139 * 174.85663 * 15 13 12 30 30 H 0.96704 * 113.99913 * 179.97438 * 16 15 13 31 31 H 1.08995 * 109.47372 * 185.00092 * 19 17 9 32 32 H 1.08997 * 109.47083 * 305.00254 * 19 17 9 33 33 H 0.96706 * 113.99969 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0068 5 1 1.8966 2.3934 -1.2159 6 1 1.8864 2.3994 1.2092 7 6 2.0103 -1.2022 0.0059 8 1 3.0539 -1.2245 -0.2711 9 7 1.3717 -2.3597 0.3628 10 6 0.2275 -2.3299 1.2840 11 6 0.4938 -3.2932 2.4394 12 6 0.8148 -4.6811 1.8799 13 6 2.0733 -4.6047 1.0125 14 1 2.9049 -4.2309 1.6101 15 6 2.4130 -5.9984 0.4803 16 8 2.7613 -6.8530 1.5713 17 6 1.8215 -3.6557 -0.1634 18 1 2.7427 -3.5201 -0.7301 19 6 0.7409 -4.2426 -1.0737 20 8 0.5786 -3.4061 -2.2209 21 1 -0.4850 0.8401 -0.0041 22 1 0.0987 -1.3204 1.6742 23 1 -0.6749 -2.6378 0.7559 24 1 -0.3891 -3.3529 3.0758 25 1 1.3400 -2.9320 3.0240 26 1 -0.0219 -5.0315 1.2755 27 1 0.9831 -5.3748 2.7036 28 1 1.5482 -6.4089 -0.0411 29 1 3.2540 -5.9288 -0.2096 30 1 2.9887 -7.7551 1.3072 31 1 1.0374 -5.2421 -1.3919 32 1 -0.2015 -4.2993 -0.5291 33 1 -0.0926 -3.7179 -2.8433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709782109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = -83.469554 kcal Electronic energy + Delta-G solvation = -15671.669117 eV Core-core repulsion = 13118.873445 eV Total energy + Delta-G solvation = -2552.795672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.73467 -36.29459 -35.28468 -33.09644 -31.03184 -30.21020 -26.44814 -25.12350 -23.82605 -21.63952 -20.82144 -18.09216 -17.33395 -16.64835 -16.33667 -14.98067 -14.70941 -14.19708 -13.93522 -13.59118 -13.21434 -12.77993 -12.45617 -12.12959 -11.88003 -11.47798 -11.15336 -10.88226 -10.64284 -10.31599 -10.16936 -10.14327 -9.91317 -9.58898 -9.44116 -9.23447 -9.06516 -8.33948 -6.57054 -5.66733 -3.07879 3.44242 3.51528 3.54144 4.40718 4.63298 4.97353 5.26569 5.36921 5.47635 5.59824 5.63930 5.79494 5.89146 6.00961 6.12440 6.19338 6.25108 6.38744 6.52743 6.63647 6.74353 6.90901 6.92604 7.01737 7.47364 7.74075 7.78711 7.91052 8.43719 8.56640 9.32009 9.94542 10.50937 11.41990 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036144 B = 0.010147 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.486016 B = 2758.640459 C = 2927.166783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.064 0.936 9 N -0.572 5.572 10 C 0.169 3.831 11 C -0.145 4.145 12 C -0.101 4.101 13 C -0.094 4.094 14 H 0.079 0.921 15 C 0.078 3.922 16 O -0.573 6.573 17 C 0.178 3.822 18 H 0.067 0.933 19 C 0.061 3.939 20 O -0.546 6.546 21 H 0.250 0.750 22 H 0.087 0.913 23 H 0.015 0.985 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.370 0.630 31 H 0.022 0.978 32 H 0.038 0.962 33 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -11.428 0.545 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.371 4.371 8 H 0.082 0.918 9 N -0.292 5.292 10 C 0.044 3.956 11 C -0.184 4.184 12 C -0.139 4.139 13 C -0.114 4.114 14 H 0.097 0.903 15 C 0.000 4.000 16 O -0.378 6.378 17 C 0.069 3.931 18 H 0.085 0.915 19 C -0.020 4.020 20 O -0.347 6.347 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.216 0.784 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.588 -10.334 1.196 10.524 hybrid contribution -0.056 -0.049 -0.723 0.727 sum 1.532 -10.383 0.473 10.506 Atomic orbital electron populations 1.70067 1.05168 1.24963 1.54155 1.25005 0.95245 0.98225 1.01051 0.86252 0.79386 0.84219 0.77101 1.20341 1.21861 1.21734 1.19145 0.92383 0.84588 1.40967 0.91792 1.43960 1.35592 1.00484 1.49196 1.20702 0.88587 0.98530 0.87791 1.22153 1.00071 0.96188 0.99960 1.21418 0.96415 0.97534 0.98507 1.21610 0.99056 0.92207 0.98522 0.90304 1.22427 0.97927 0.91346 0.88261 1.86521 1.91017 1.24903 1.35332 1.20415 0.95538 0.87017 0.90081 0.91485 1.22933 1.00269 0.91013 0.87734 1.86757 1.61306 1.52777 1.33885 0.93986 0.89480 0.96657 0.93356 0.92699 0.93114 0.92896 0.93828 0.93899 0.78400 0.95995 0.94342 0.79967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 11.19 55.49 0.62 -26.20 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 22.44 29.59 -169.99 -5.03 17.41 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.86 9.58 -15.06 -0.14 -7.00 16 8 H 0.06 1.81 7.89 -52.49 -0.41 1.40 16 9 N -0.57 -14.67 2.66 -165.04 -0.44 -15.11 16 10 C 0.17 4.17 4.86 -3.93 -0.02 4.15 16 11 C -0.14 -2.92 6.07 -26.83 -0.16 -3.08 16 12 C -0.10 -1.83 4.87 -26.69 -0.13 -1.96 16 13 C -0.09 -1.72 2.35 -90.50 -0.21 -1.93 16 14 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 15 C 0.08 1.14 5.77 37.16 0.21 1.36 16 16 O -0.57 -7.91 13.18 -35.23 -0.46 -8.38 16 17 C 0.18 3.82 2.55 -67.60 -0.17 3.65 16 18 H 0.07 1.50 7.93 -51.93 -0.41 1.08 16 19 C 0.06 1.18 5.79 37.16 0.22 1.39 16 20 O -0.55 -11.71 13.61 -35.23 -0.48 -12.19 16 21 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 22 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 23 H 0.02 0.40 7.39 -51.93 -0.38 0.01 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.89 6.60 -51.93 -0.34 0.55 16 27 H 0.05 0.91 7.80 -51.93 -0.40 0.50 16 28 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.37 3.15 9.12 45.56 0.42 3.57 16 31 H 0.02 0.35 6.23 -51.93 -0.32 0.03 16 32 H 0.04 0.77 5.75 -51.93 -0.30 0.47 16 33 H 0.36 5.68 9.12 45.56 0.42 6.10 16 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -33.13 259.61 -5.61 -38.73 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.23 Total: 5.24 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.50 Total: -3.42 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.18 Total: -41.30 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.94 Total: -20.57 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.13 -5.61 -38.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709782109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.738 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds