Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47205 * 179.72079 * 3 2 1 5 5 H 1.48496 * 109.46959 * 299.72245 * 3 2 1 6 6 H 1.48504 * 109.47020 * 59.72471 * 3 2 1 7 7 C 1.38818 * 119.99887 * 179.72111 * 2 1 3 8 8 H 1.08000 * 119.99531 * 162.76734 * 7 2 1 9 9 N 1.36931 * 119.99918 * 342.76572 * 7 2 1 10 10 C 1.46922 * 120.63190 * 332.17435 * 9 7 2 11 11 C 1.52767 * 109.00727 * 233.58234 * 10 9 7 12 12 C 1.53042 * 109.38158 * 305.58661 * 11 10 9 13 13 C 1.53038 * 109.53777 * 61.23943 * 12 11 10 14 14 H 1.09006 * 109.50056 * 58.58935 * 13 12 11 15 15 C 1.53005 * 109.52684 * 178.66596 * 13 12 11 16 16 O 1.42903 * 109.46803 * 294.85554 * 15 13 12 17 17 C 1.46931 * 120.62864 * 152.44889 * 9 7 2 18 18 H 1.09004 * 109.58393 * 6.44240 * 17 9 7 19 19 C 1.52997 * 109.58853 * 246.15647 * 17 9 7 20 20 O 1.42902 * 109.46987 * 65.00192 * 19 17 9 21 21 H 0.97001 * 119.99902 * 0.28128 * 1 2 3 22 22 H 1.08994 * 109.58873 * 353.41342 * 10 9 7 23 23 H 1.08999 * 109.59031 * 113.84742 * 10 9 7 24 24 H 1.08995 * 109.56595 * 185.55346 * 11 10 9 25 25 H 1.09004 * 109.38641 * 65.50963 * 11 10 9 26 26 H 1.08998 * 109.46455 * 301.21804 * 12 11 10 27 27 H 1.09002 * 109.46251 * 181.25777 * 12 11 10 28 28 H 1.09002 * 109.46921 * 54.85051 * 15 13 12 29 29 H 1.09000 * 109.47139 * 174.85663 * 15 13 12 30 30 H 0.96704 * 113.99913 * 179.97438 * 16 15 13 31 31 H 1.08995 * 109.47372 * 185.00092 * 19 17 9 32 32 H 1.08997 * 109.47083 * 305.00254 * 19 17 9 33 33 H 0.96706 * 113.99969 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0068 5 1 1.8966 2.3934 -1.2159 6 1 1.8864 2.3994 1.2092 7 6 2.0103 -1.2022 0.0059 8 1 3.0539 -1.2245 -0.2711 9 7 1.3717 -2.3597 0.3628 10 6 0.2275 -2.3299 1.2840 11 6 0.4938 -3.2932 2.4394 12 6 0.8148 -4.6811 1.8799 13 6 2.0733 -4.6047 1.0125 14 1 2.9049 -4.2309 1.6101 15 6 2.4130 -5.9984 0.4803 16 8 2.7613 -6.8530 1.5713 17 6 1.8215 -3.6557 -0.1634 18 1 2.7427 -3.5201 -0.7301 19 6 0.7409 -4.2426 -1.0737 20 8 0.5786 -3.4061 -2.2209 21 1 -0.4850 0.8401 -0.0041 22 1 0.0987 -1.3204 1.6742 23 1 -0.6749 -2.6378 0.7559 24 1 -0.3891 -3.3529 3.0758 25 1 1.3400 -2.9320 3.0240 26 1 -0.0219 -5.0315 1.2755 27 1 0.9831 -5.3748 2.7036 28 1 1.5482 -6.4089 -0.0411 29 1 3.2540 -5.9288 -0.2096 30 1 2.9887 -7.7551 1.3072 31 1 1.0374 -5.2421 -1.3919 32 1 -0.2015 -4.2993 -0.5291 33 1 -0.0926 -3.7179 -2.8433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709782109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = -111.006449 kcal Electronic energy + Delta-G solvation = -15672.863206 eV Core-core repulsion = 13118.873445 eV Total energy + Delta-G solvation = -2553.989762 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.30854 -37.52919 -36.93597 -34.94989 -32.67560 -32.14187 -28.17488 -26.67497 -25.63098 -23.30837 -22.49415 -19.71839 -18.72401 -18.52939 -17.78122 -16.91549 -16.05231 -15.99547 -15.48235 -15.16883 -14.81356 -14.48327 -14.15010 -13.75865 -13.45250 -13.11695 -12.90968 -12.79620 -12.45047 -12.19533 -11.97072 -11.85477 -11.45542 -11.20921 -11.07390 -10.71519 -10.61376 -10.43974 -8.61702 -7.82134 -5.25224 1.44898 1.45898 1.56750 2.52132 3.30044 3.34999 3.46592 3.83008 3.92724 4.13969 4.26307 4.37257 4.46406 4.55007 4.61681 4.71875 4.76436 4.78419 4.98857 5.03129 5.09918 5.31491 5.38488 5.42190 5.57515 5.68274 5.79356 6.42825 7.01100 7.10432 7.20794 7.91043 8.41665 9.24224 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036144 B = 0.010147 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.486016 B = 2758.640459 C = 2927.166783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.050 4.050 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.058 0.942 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.093 4.093 13 C -0.089 4.089 14 H 0.058 0.942 15 C 0.088 3.912 16 O -0.587 6.587 17 C 0.170 3.830 18 H 0.051 0.949 19 C 0.066 3.934 20 O -0.581 6.581 21 H 0.246 0.754 22 H 0.049 0.951 23 H -0.004 1.004 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.396 0.604 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -13.353 0.604 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.245 4.245 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.075 0.925 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.131 4.131 13 C -0.109 4.109 14 H 0.076 0.924 15 C 0.010 3.990 16 O -0.395 6.395 17 C 0.063 3.937 18 H 0.069 0.931 19 C -0.013 4.013 20 O -0.387 6.387 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.015 0.985 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.246 0.754 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.103 -12.321 1.245 12.561 hybrid contribution -0.189 0.480 -0.756 0.915 sum 1.914 -11.841 0.489 12.004 Atomic orbital electron populations 1.70212 1.06431 1.25259 1.55608 1.25713 0.96054 1.01176 1.01563 0.85281 0.78591 0.80310 0.76723 1.19394 1.22031 1.21591 1.19391 0.92406 0.86213 1.40216 0.92472 1.44142 1.35588 1.01387 1.50091 1.20478 0.87866 0.97605 0.88796 1.22014 1.00639 0.96542 0.98311 1.21362 0.96558 0.96062 0.99071 1.21439 0.98476 0.94056 0.96926 0.92387 1.22191 0.99219 0.89264 0.88284 1.86444 1.91132 1.26692 1.35280 1.20627 0.95421 0.86092 0.91579 0.93073 1.22869 0.99057 0.92493 0.86928 1.86689 1.62568 1.54417 1.34982 0.94455 0.93207 0.98548 0.91282 0.93626 0.92132 0.91121 0.91895 0.92792 0.75418 0.91466 0.94940 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 11.19 21.65 0.24 -56.75 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 3 Si 0.96 47.09 29.59 68.60 2.03 49.12 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.25 -14.62 9.58 84.04 0.81 -13.82 16 8 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 9 N -0.59 -30.71 2.66 -676.05 -1.80 -32.50 16 10 C 0.18 8.93 4.86 86.22 0.42 9.35 16 11 C -0.14 -5.39 6.07 30.53 0.19 -5.20 16 12 C -0.09 -3.14 4.87 30.62 0.15 -2.99 16 13 C -0.09 -3.08 2.35 -10.72 -0.03 -3.10 16 14 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 15 C 0.09 2.25 5.77 71.98 0.42 2.66 16 16 O -0.59 -13.85 13.18 -148.98 -1.96 -15.81 16 17 C 0.17 7.17 2.55 44.97 0.11 7.28 16 18 H 0.05 2.27 7.93 -2.39 -0.02 2.26 16 19 C 0.07 2.43 5.79 71.98 0.42 2.84 16 20 O -0.58 -24.42 13.61 -148.98 -2.03 -26.45 16 21 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 22 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 23 H 0.00 -0.19 7.39 -2.39 -0.02 -0.20 16 24 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.06 1.94 6.60 -2.39 -0.02 1.93 16 27 H 0.07 2.18 7.80 -2.39 -0.02 2.16 16 28 H 0.06 1.37 6.57 -2.39 -0.02 1.36 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.40 4.97 9.12 -74.05 -0.68 4.30 16 31 H 0.07 1.88 6.23 -2.39 -0.01 1.87 16 32 H 0.03 1.24 5.75 -2.39 -0.01 1.22 16 33 H 0.38 11.56 9.12 -74.05 -0.68 10.89 16 Total: -1.00 -72.36 259.61 -0.85 -73.21 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.23 Total: 14.67 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 2.90 Total: -5.48 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -1.55 Total: -89.25 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -3.99 Total: -42.26 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -72.36 -0.85 -73.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709782109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.801 kcal (2) G-P(sol) polarization free energy of solvation -72.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds