Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99431 * 2 1 4 4 H 1.48507 * 109.46807 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47423 * 299.99716 * 3 2 1 6 6 H 1.48494 * 109.47395 * 60.00190 * 3 2 1 7 7 C 1.38807 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00033 * 166.66119 * 7 2 1 9 9 N 1.36932 * 120.00178 * 346.66146 * 7 2 1 10 10 C 1.46931 * 120.62963 * 328.70330 * 9 7 2 11 11 C 1.53199 * 108.77553 * 233.58543 * 10 9 7 12 12 C 1.53035 * 109.33973 * 305.38163 * 11 10 9 13 13 C 1.53044 * 109.54099 * 61.31466 * 12 11 10 14 14 H 1.09009 * 109.49733 * 58.64855 * 13 12 11 15 15 C 1.52998 * 109.50013 * 178.71586 * 13 12 11 16 16 O 1.42899 * 109.46944 * 294.93486 * 15 13 12 17 17 C 1.46927 * 120.63340 * 148.67940 * 9 7 2 18 18 H 1.09000 * 109.70690 * 246.27149 * 17 9 7 19 19 C 1.53001 * 109.58337 * 6.62787 * 17 9 7 20 20 O 1.42891 * 109.47066 * 294.28643 * 19 17 9 21 21 H 0.96996 * 119.99918 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.58844 * 353.37641 * 10 9 7 23 23 H 1.09004 * 109.58724 * 113.65692 * 10 9 7 24 24 H 1.08997 * 109.49090 * 65.31718 * 11 10 9 25 25 H 1.08997 * 109.49655 * 185.38086 * 11 10 9 26 26 H 1.09000 * 109.43486 * 301.31209 * 12 11 10 27 27 H 1.08994 * 109.48821 * 181.35059 * 12 11 10 28 28 H 1.09000 * 109.46814 * 54.93421 * 15 13 12 29 29 H 1.08998 * 109.47224 * 174.94028 * 15 13 12 30 30 H 0.96701 * 114.00325 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.47415 * 54.28995 * 19 17 9 32 32 H 1.09003 * 109.47084 * 174.28481 * 19 17 9 33 33 H 0.96705 * 114.00323 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0686 -1.2148 -0.2152 9 7 1.3535 -2.3719 0.2746 10 6 0.2026 -2.3879 1.1879 11 6 0.4530 -3.4343 2.2784 12 6 0.7557 -4.7847 1.6251 13 6 2.0185 -4.6672 0.7684 14 1 2.8534 -4.3490 1.3927 15 6 2.3383 -6.0256 0.1413 16 8 2.6678 -6.9599 1.1712 17 6 1.7858 -3.6348 -0.3393 18 1 1.0142 -3.9960 -1.0192 19 6 3.0867 -3.4102 -1.1126 20 8 2.8401 -2.5366 -2.2161 21 1 -0.4850 0.8400 -0.0004 22 1 0.0847 -1.4052 1.6445 23 1 -0.7003 -2.6438 0.6334 24 1 1.3023 -3.1274 2.8888 25 1 -0.4331 -3.5241 2.9068 26 1 -0.0839 -5.0794 0.9957 27 1 0.9107 -5.5364 2.3990 28 1 1.4697 -6.3846 -0.4106 29 1 3.1837 -5.9218 -0.5389 30 1 2.8820 -7.8449 0.8456 31 1 3.8289 -2.9613 -0.4526 32 1 3.4595 -4.3657 -1.4818 33 1 3.6229 -2.3492 -2.7521 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709882362.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -82.765448 kcal Electronic energy + Delta-G solvation = -15647.454776 eV Core-core repulsion = 13094.689636 eV Total energy + Delta-G solvation = -2552.765140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.57279 -36.33477 -35.39150 -33.01936 -31.21173 -30.18685 -26.13799 -25.15502 -24.14821 -21.06632 -20.37660 -19.11430 -17.25981 -16.49917 -16.15146 -15.36949 -14.66075 -14.02881 -13.89678 -13.63899 -13.00478 -12.81496 -12.53976 -12.06679 -11.85050 -11.44540 -10.99732 -10.80713 -10.64503 -10.31904 -10.22399 -10.04487 -9.90745 -9.73647 -9.42390 -9.21351 -9.05085 -8.31073 -6.47613 -5.62561 -3.07278 3.45059 3.51337 3.53462 4.41088 4.64621 4.99857 5.23745 5.30032 5.53907 5.55127 5.69558 5.87870 5.95045 6.00356 6.06278 6.22828 6.31089 6.39400 6.46382 6.62302 6.80771 6.82652 6.98972 7.09934 7.49260 7.76259 7.79315 7.95997 8.43971 8.60691 9.35936 9.96696 10.54574 11.47259 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036609 B = 0.010873 C = 0.009137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.646269 B = 2574.452007 C = 3063.868013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.223 4.223 8 H 0.067 0.933 9 N -0.581 5.581 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.097 4.097 13 C -0.098 4.098 14 H 0.074 0.926 15 C 0.078 3.922 16 O -0.573 6.573 17 C 0.181 3.819 18 H 0.031 0.969 19 C 0.086 3.914 20 O -0.542 6.542 21 H 0.250 0.750 22 H 0.086 0.914 23 H 0.017 0.983 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.370 0.630 31 H 0.045 0.955 32 H 0.027 0.973 33 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -10.380 -0.006 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.353 4.353 8 H 0.084 0.916 9 N -0.304 5.304 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.135 4.135 13 C -0.118 4.118 14 H 0.092 0.908 15 C 0.000 4.000 16 O -0.377 6.377 17 C 0.073 3.927 18 H 0.048 0.952 19 C 0.008 3.992 20 O -0.344 6.344 21 H 0.060 0.940 22 H 0.104 0.896 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.216 0.784 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.053 -9.699 0.608 10.530 hybrid contribution 1.049 0.370 -0.685 1.306 sum 5.102 -9.329 -0.076 10.633 Atomic orbital electron populations 1.70022 1.05174 1.24900 1.55314 1.25084 0.95278 0.98170 1.01245 0.86232 0.79141 0.84389 0.77006 1.20535 1.21923 1.21935 1.19054 0.91375 0.83575 1.41280 0.91589 1.44019 1.35139 1.02149 1.49045 1.20785 0.88423 0.97457 0.88681 1.22218 1.00004 0.96511 0.99616 1.21337 0.96277 0.97571 0.98318 1.21661 0.99170 0.92306 0.98683 0.90767 1.22397 0.98118 0.90034 0.89424 1.86518 1.91729 1.23464 1.36039 1.20363 0.93598 0.88116 0.90612 0.95157 1.22197 0.97893 0.90706 0.88390 1.86828 1.36474 1.68903 1.42148 0.94026 0.89613 0.96492 0.92795 0.93336 0.93122 0.92856 0.93930 0.93857 0.78408 0.93693 0.95516 0.79889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.33 11.21 55.49 0.62 -26.71 16 2 C 0.00 -0.01 4.98 -17.43 -0.09 -0.10 16 3 Si 0.90 22.46 29.57 -169.99 -5.03 17.43 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.22 -6.20 7.82 -15.06 -0.12 -6.32 16 8 H 0.07 1.81 5.92 -52.49 -0.31 1.50 16 9 N -0.58 -14.94 2.98 -164.76 -0.49 -15.43 16 10 C 0.17 4.28 5.26 -3.70 -0.02 4.26 16 11 C -0.14 -2.94 6.08 -26.61 -0.16 -3.10 16 12 C -0.10 -1.80 5.08 -26.69 -0.14 -1.94 16 13 C -0.10 -1.80 2.04 -90.50 -0.18 -1.98 16 14 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 15 C 0.08 1.15 6.31 37.16 0.23 1.39 16 16 O -0.57 -7.95 13.18 -35.23 -0.46 -8.42 16 17 C 0.18 3.90 2.65 -67.60 -0.18 3.72 16 18 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 19 C 0.09 1.66 5.62 37.16 0.21 1.87 16 20 O -0.54 -11.26 12.02 -35.23 -0.42 -11.69 16 21 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.09 2.37 6.19 -51.93 -0.32 2.05 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.93 7.79 -51.93 -0.40 0.53 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.58 6.29 -51.93 -0.33 0.25 16 30 H 0.37 3.17 9.12 45.56 0.42 3.59 16 31 H 0.04 0.89 7.07 -51.93 -0.37 0.52 16 32 H 0.03 0.42 6.30 -51.93 -0.33 0.10 16 33 H 0.36 5.41 9.12 45.56 0.42 5.83 16 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -33.23 259.22 -5.64 -38.87 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.32 Total: 4.24 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.44 Total: -2.20 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.13 Total: -42.15 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.89 Total: -20.11 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.23 -5.64 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709882362.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.891 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds