Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00359 * 2 1 4 4 H 1.48494 * 109.47156 * 264.63085 * 3 2 1 5 5 H 1.48503 * 109.46909 * 24.62895 * 3 2 1 6 6 H 1.48493 * 109.47146 * 144.62464 * 3 2 1 7 7 C 1.38816 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99526 * 34.66423 * 7 2 1 9 9 N 1.36939 * 119.99992 * 214.66801 * 7 2 1 10 10 C 1.46922 * 120.63590 * 41.37707 * 9 7 2 11 11 C 1.53193 * 108.77480 * 126.41441 * 10 9 7 12 12 C 1.53036 * 109.31307 * 54.63384 * 11 10 9 13 13 C 1.53036 * 109.54297 * 298.63632 * 12 11 10 14 14 H 1.09003 * 109.49594 * 301.41521 * 13 12 11 15 15 C 1.52993 * 109.50083 * 181.31407 * 13 12 11 16 16 O 1.42903 * 109.46978 * 65.16248 * 15 13 12 17 17 C 1.46926 * 120.62526 * 221.40063 * 9 7 2 18 18 H 1.08996 * 109.58825 * 113.79531 * 17 9 7 19 19 C 1.53002 * 109.58965 * 353.37451 * 17 9 7 20 20 O 1.42902 * 109.47198 * 64.99796 * 19 17 9 21 21 H 0.97009 * 119.99527 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.58486 * 246.20231 * 10 9 7 23 23 H 1.09004 * 109.58171 * 6.62738 * 10 9 7 24 24 H 1.09002 * 109.49677 * 174.59090 * 11 10 9 25 25 H 1.08999 * 109.49571 * 294.65010 * 11 10 9 26 26 H 1.09003 * 109.45940 * 58.65447 * 12 11 10 27 27 H 1.08999 * 109.45882 * 178.61163 * 12 11 10 28 28 H 1.09003 * 109.47380 * 185.15648 * 15 13 12 29 29 H 1.08998 * 109.47509 * 305.16181 * 15 13 12 30 30 H 0.96697 * 113.99746 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.47587 * 184.99844 * 19 17 9 32 32 H 1.09008 * 109.46951 * 305.00095 * 19 17 9 33 33 H 0.96703 * 114.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6112 1.9809 -1.3939 5 1 1.3956 2.6828 0.5835 6 1 3.4863 1.4756 0.8105 7 6 2.0102 -1.2022 0.0005 8 1 1.6140 -2.0546 -0.5311 9 7 3.1973 -1.3071 0.6752 10 6 3.3617 -0.6953 2.0007 11 6 3.8551 -1.7652 2.9799 12 6 5.1258 -2.4123 2.4243 13 6 4.8135 -3.0883 1.0873 14 1 4.0340 -3.8366 1.2313 15 6 6.0767 -3.7628 0.5488 16 8 6.4600 -4.8248 1.4248 17 6 4.3309 -2.0334 0.0868 18 1 5.1404 -1.3356 -0.1274 19 6 3.8853 -2.7190 -1.2064 20 8 3.5302 -1.7281 -2.1730 21 1 -0.4850 0.8402 -0.0004 22 1 4.0922 0.1117 1.9426 23 1 2.4047 -0.3008 2.3423 24 1 4.0729 -1.3040 3.9432 25 1 3.0845 -2.5255 3.1065 26 1 5.8876 -1.6471 2.2750 27 1 5.4928 -3.1569 3.1307 28 1 5.8784 -4.1652 -0.4447 29 1 6.8825 -3.0313 0.4903 30 1 7.2551 -5.2983 1.1444 31 1 4.7013 -3.3288 -1.5943 32 1 3.0226 -3.3535 -1.0027 33 1 3.2368 -2.0919 -3.0196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709882367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -79.624562 kcal Electronic energy + Delta-G solvation = -15700.232578 eV Core-core repulsion = 13147.603638 eV Total energy + Delta-G solvation = -2552.628941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72538 -36.39804 -35.44862 -33.00246 -31.39903 -30.80122 -26.36548 -25.26224 -24.10819 -21.11120 -20.59767 -19.31589 -17.32500 -16.51929 -16.22924 -15.30468 -14.81955 -14.50397 -13.83964 -13.62710 -13.19532 -12.83281 -12.57964 -12.48867 -11.95819 -11.56213 -11.42061 -11.14402 -10.54649 -10.46914 -10.31858 -10.13105 -9.89453 -9.65542 -9.57022 -9.32776 -9.09229 -8.18891 -6.59115 -5.93042 -3.21959 3.54023 3.62384 3.70327 4.36713 4.72109 4.91683 5.03044 5.18749 5.32751 5.45208 5.60410 5.71616 5.83745 5.93878 5.96967 6.11032 6.14008 6.19708 6.35944 6.46946 6.55684 6.62596 6.76284 6.90404 6.98724 7.16389 7.72450 8.16414 8.44907 8.52043 9.12427 9.85798 10.31568 11.22968 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.011895 C = 0.010151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.408851 B = 2353.433335 C = 2757.672372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.048 3.952 3 Si 0.848 3.152 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.264 1.264 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.590 5.590 10 C 0.143 3.857 11 C -0.138 4.138 12 C -0.098 4.098 13 C -0.097 4.097 14 H 0.078 0.922 15 C 0.078 3.922 16 O -0.573 6.573 17 C 0.176 3.824 18 H 0.032 0.968 19 C 0.090 3.910 20 O -0.543 6.543 21 H 0.260 0.740 22 H 0.023 0.977 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.371 0.629 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -6.740 0.659 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.153 4.153 3 Si 0.676 3.324 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.177 4.177 12 C -0.136 4.136 13 C -0.118 4.118 14 H 0.096 0.904 15 C 0.000 4.000 16 O -0.377 6.377 17 C 0.069 3.931 18 H 0.050 0.950 19 C 0.012 3.988 20 O -0.345 6.345 21 H 0.070 0.930 22 H 0.040 0.960 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.217 0.783 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.900 -6.029 1.468 12.542 hybrid contribution 0.854 0.501 -0.940 1.365 sum 11.754 -5.529 0.528 13.000 Atomic orbital electron populations 1.70067 1.06363 1.26709 1.49826 1.25511 0.94707 0.97432 0.97615 0.87306 0.81300 0.85466 0.78337 1.21676 1.22983 1.18930 1.18398 0.93671 0.95368 1.29902 0.90911 1.44292 1.10126 1.62650 1.14340 1.21305 0.99268 0.92936 0.84728 1.22073 0.97310 1.00063 0.98264 1.21343 0.97572 0.98719 0.95967 1.21615 0.95551 0.97832 0.96780 0.90358 1.22382 0.96981 0.88474 0.92138 1.86514 1.48924 1.49458 1.52829 1.20514 0.91257 0.91878 0.89416 0.95043 1.22118 0.97002 0.90373 0.89328 1.86764 1.88427 1.34256 1.25039 0.92999 0.95962 0.91446 0.93025 0.91950 0.93094 0.92388 0.93682 0.93973 0.78304 0.95536 0.93372 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.97 55.49 0.78 -26.60 16 2 C 0.05 1.42 4.83 -17.43 -0.08 1.34 16 3 Si 0.85 22.68 27.40 -169.99 -4.66 18.02 16 4 H -0.29 -7.98 7.11 56.52 0.40 -7.57 16 5 H -0.30 -8.12 7.11 56.52 0.40 -7.71 16 6 H -0.26 -6.82 5.23 56.52 0.30 -6.53 16 7 C -0.25 -6.86 7.58 -15.06 -0.11 -6.98 16 8 H 0.07 2.17 6.63 -52.49 -0.35 1.83 16 9 N -0.59 -14.35 2.46 -164.77 -0.41 -14.76 16 10 C 0.14 3.23 4.59 -3.71 -0.02 3.21 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.10 -1.69 5.08 -26.69 -0.14 -1.82 16 13 C -0.10 -1.70 2.04 -90.50 -0.18 -1.89 16 14 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 15 C 0.08 1.09 6.31 37.15 0.23 1.33 16 16 O -0.57 -7.57 13.18 -35.23 -0.46 -8.04 16 17 C 0.18 3.60 2.65 -67.60 -0.18 3.42 16 18 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 19 C 0.09 1.70 5.64 37.16 0.21 1.91 16 20 O -0.54 -11.20 12.10 -35.23 -0.43 -11.62 16 21 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 22 H 0.02 0.51 6.70 -51.93 -0.35 0.16 16 23 H 0.07 1.64 7.03 -51.93 -0.36 1.27 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 28 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.37 2.98 9.12 45.56 0.42 3.39 16 31 H 0.03 0.41 6.32 -51.93 -0.33 0.08 16 32 H 0.05 0.96 7.11 -51.92 -0.37 0.59 16 33 H 0.36 5.57 9.12 45.56 0.42 5.98 16 LS Contribution 256.65 15.07 3.87 3.87 Total: -1.00 -33.48 256.65 -5.18 -38.66 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.44 Total: 2.69 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.43 Total: -2.22 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.37 Total: -41.36 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.89 Total: -19.66 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.66 Total: 18.02 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.48 -5.18 -38.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709882367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.960 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds