Wall clock time and date at job start Mon Mar 30 2020 02:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00359 * 2 1 4 4 H 1.48494 * 109.47156 * 264.63085 * 3 2 1 5 5 H 1.48503 * 109.46909 * 24.62895 * 3 2 1 6 6 H 1.48493 * 109.47146 * 144.62464 * 3 2 1 7 7 C 1.38816 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99526 * 34.66423 * 7 2 1 9 9 N 1.36939 * 119.99992 * 214.66801 * 7 2 1 10 10 C 1.46922 * 120.63590 * 41.37707 * 9 7 2 11 11 C 1.53193 * 108.77480 * 126.41441 * 10 9 7 12 12 C 1.53036 * 109.31307 * 54.63384 * 11 10 9 13 13 C 1.53036 * 109.54297 * 298.63632 * 12 11 10 14 14 H 1.09003 * 109.49594 * 301.41521 * 13 12 11 15 15 C 1.52993 * 109.50083 * 181.31407 * 13 12 11 16 16 O 1.42903 * 109.46978 * 65.16248 * 15 13 12 17 17 C 1.46926 * 120.62526 * 221.40063 * 9 7 2 18 18 H 1.08996 * 109.58825 * 113.79531 * 17 9 7 19 19 C 1.53002 * 109.58965 * 353.37451 * 17 9 7 20 20 O 1.42902 * 109.47198 * 64.99796 * 19 17 9 21 21 H 0.97009 * 119.99527 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.58486 * 246.20231 * 10 9 7 23 23 H 1.09004 * 109.58171 * 6.62738 * 10 9 7 24 24 H 1.09002 * 109.49677 * 174.59090 * 11 10 9 25 25 H 1.08999 * 109.49571 * 294.65010 * 11 10 9 26 26 H 1.09003 * 109.45940 * 58.65447 * 12 11 10 27 27 H 1.08999 * 109.45882 * 178.61163 * 12 11 10 28 28 H 1.09003 * 109.47380 * 185.15648 * 15 13 12 29 29 H 1.08998 * 109.47509 * 305.16181 * 15 13 12 30 30 H 0.96697 * 113.99746 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.47587 * 184.99844 * 19 17 9 32 32 H 1.09008 * 109.46951 * 305.00095 * 19 17 9 33 33 H 0.96703 * 114.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6112 1.9809 -1.3939 5 1 1.3956 2.6828 0.5835 6 1 3.4863 1.4756 0.8105 7 6 2.0102 -1.2022 0.0005 8 1 1.6140 -2.0546 -0.5311 9 7 3.1973 -1.3071 0.6752 10 6 3.3617 -0.6953 2.0007 11 6 3.8551 -1.7652 2.9799 12 6 5.1258 -2.4123 2.4243 13 6 4.8135 -3.0883 1.0873 14 1 4.0340 -3.8366 1.2313 15 6 6.0767 -3.7628 0.5488 16 8 6.4600 -4.8248 1.4248 17 6 4.3309 -2.0334 0.0868 18 1 5.1404 -1.3356 -0.1274 19 6 3.8853 -2.7190 -1.2064 20 8 3.5302 -1.7281 -2.1730 21 1 -0.4850 0.8402 -0.0004 22 1 4.0922 0.1117 1.9426 23 1 2.4047 -0.3008 2.3423 24 1 4.0729 -1.3040 3.9432 25 1 3.0845 -2.5255 3.1065 26 1 5.8876 -1.6471 2.2750 27 1 5.4928 -3.1569 3.1307 28 1 5.8784 -4.1652 -0.4447 29 1 6.8825 -3.0313 0.4903 30 1 7.2551 -5.2983 1.1444 31 1 4.7013 -3.3288 -1.5943 32 1 3.0226 -3.3535 -1.0027 33 1 3.2368 -2.0919 -3.0196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709882367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:05 Heat of formation + Delta-G solvation = -107.888848 kcal Electronic energy + Delta-G solvation = -15701.458210 eV Core-core repulsion = 13147.603638 eV Total energy + Delta-G solvation = -2553.854572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24432 -37.60046 -36.99089 -34.86943 -32.93786 -32.73738 -27.95534 -26.81098 -25.86121 -22.75963 -22.15925 -20.90038 -18.51811 -18.44067 -17.72564 -17.07604 -16.48907 -15.91666 -15.41556 -15.17590 -14.82411 -14.48724 -14.29165 -14.14984 -13.64374 -13.16362 -13.00381 -12.75213 -12.59012 -12.28789 -11.91835 -11.66663 -11.52619 -11.25479 -11.16154 -10.87962 -10.51890 -10.35051 -8.57459 -8.17725 -5.41548 1.37718 1.45419 1.53450 2.52946 3.00955 3.27212 3.43558 3.67252 3.89658 4.12644 4.22859 4.36454 4.46654 4.50178 4.56900 4.62142 4.68198 4.76667 4.88544 4.98872 5.03605 5.15246 5.26108 5.34340 5.37874 5.61586 6.01527 6.28997 6.99517 7.07568 7.15622 7.71731 8.20989 9.02791 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.011895 C = 0.010151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.408851 B = 2353.433335 C = 2757.672372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.901 3.099 4 H -0.300 1.300 5 H -0.305 1.305 6 H -0.250 1.250 7 C -0.219 4.219 8 H 0.045 0.955 9 N -0.606 5.606 10 C 0.138 3.862 11 C -0.130 4.130 12 C -0.094 4.094 13 C -0.093 4.093 14 H 0.058 0.942 15 C 0.087 3.913 16 O -0.587 6.587 17 C 0.169 3.831 18 H 0.032 0.968 19 C 0.091 3.909 20 O -0.574 6.574 21 H 0.259 0.741 22 H 0.024 0.976 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.396 0.604 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.240 -7.505 1.043 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.730 3.270 4 H -0.228 1.228 5 H -0.233 1.233 6 H -0.174 1.174 7 C -0.349 4.349 8 H 0.063 0.937 9 N -0.331 5.331 10 C 0.013 3.987 11 C -0.168 4.168 12 C -0.131 4.131 13 C -0.113 4.113 14 H 0.077 0.923 15 C 0.009 3.991 16 O -0.395 6.395 17 C 0.063 3.937 18 H 0.050 0.950 19 C 0.013 3.987 20 O -0.379 6.379 21 H 0.067 0.933 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.246 0.754 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 13.743 -6.821 1.853 15.454 hybrid contribution 0.032 0.615 -1.063 1.228 sum 13.774 -6.206 0.790 15.129 Atomic orbital electron populations 1.70150 1.07618 1.27022 1.53181 1.25951 0.95131 0.99968 0.99114 0.86433 0.80606 0.82340 0.77631 1.22849 1.23303 1.17385 1.18273 0.94603 0.94059 1.27958 0.93722 1.44467 1.10417 1.63109 1.15072 1.21327 0.98149 0.94246 0.84980 1.21959 0.97815 0.98598 0.98473 1.21329 0.96653 0.99185 0.95981 1.21465 0.96970 0.96628 0.96257 0.92333 1.22168 0.95458 0.89067 0.92368 1.86440 1.50676 1.49438 1.52989 1.20744 0.89682 0.92377 0.90870 0.95034 1.22186 0.97767 0.89966 0.88795 1.86680 1.88771 1.35899 1.26567 0.93251 0.95765 0.94093 0.90350 0.93280 0.92074 0.90819 0.92293 0.92436 0.75418 0.90988 0.95313 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.97 21.65 0.30 -59.04 16 2 C 0.00 -0.28 4.83 84.86 0.41 0.13 16 3 Si 0.90 47.56 27.40 68.60 1.88 49.44 16 4 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 5 H -0.31 -16.13 7.11 99.48 0.71 -15.42 16 6 H -0.25 -12.38 5.23 99.48 0.52 -11.86 16 7 C -0.22 -12.45 7.58 84.03 0.64 -11.81 16 8 H 0.05 2.77 6.63 -2.91 -0.02 2.75 16 9 N -0.61 -29.16 2.46 -675.23 -1.66 -30.83 16 10 C 0.14 6.10 4.59 86.36 0.40 6.50 16 11 C -0.13 -4.58 6.08 30.67 0.19 -4.39 16 12 C -0.09 -2.91 5.08 30.62 0.16 -2.76 16 13 C -0.09 -3.00 2.04 -10.72 -0.02 -3.02 16 14 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 15 C 0.09 2.07 6.31 71.98 0.45 2.53 16 16 O -0.59 -13.04 13.18 -148.98 -1.96 -15.00 16 17 C 0.17 6.59 2.65 44.98 0.12 6.71 16 18 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 19 C 0.09 3.26 5.64 71.98 0.41 3.67 16 20 O -0.57 -23.10 12.10 -148.98 -1.80 -24.90 16 21 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 22 H 0.02 1.07 6.70 -2.39 -0.02 1.05 16 23 H 0.04 2.00 7.03 -2.39 -0.02 1.98 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.07 2.10 7.79 -2.39 -0.02 2.08 16 28 H 0.06 1.23 6.30 -2.39 -0.02 1.22 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.40 4.55 9.12 -74.06 -0.68 3.88 16 31 H 0.07 1.95 6.32 -2.39 -0.02 1.93 16 32 H 0.03 1.14 7.11 -2.38 -0.02 1.12 16 33 H 0.38 11.40 9.12 -74.06 -0.68 10.73 16 Total: -1.00 -72.52 256.65 -0.93 -73.45 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.42 Total: 9.32 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 2.74 Total: -2.45 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.36 Total: -89.86 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -3.77 Total: -39.90 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.88 Total: 49.44 kcal Total: -72.52 -0.93 -73.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709882367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.439 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds