Wall clock time and date at job start Mon Mar 30 2020 02:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99824 * 2 1 4 4 H 1.48497 * 109.46686 * 239.99895 * 3 2 1 5 5 H 1.48500 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47083 * 119.99938 * 3 2 1 7 7 C 1.37875 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47047 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.46846 * 110.99942 * 293.95697 * 11 10 9 13 13 C 1.53035 * 109.52744 * 174.16069 * 12 11 10 14 14 C 1.53123 * 109.27774 * 59.17321 * 13 12 11 15 15 H 1.09000 * 109.52219 * 182.44440 * 14 13 12 16 16 O 1.42898 * 109.56929 * 62.29065 * 14 13 12 17 17 C 1.53114 * 109.16198 * 302.35270 * 14 13 12 18 18 H 1.09000 * 109.50493 * 297.71120 * 17 14 13 19 19 O 1.42896 * 109.50429 * 177.59525 * 17 14 13 20 20 C 1.46844 * 111.00328 * 169.74543 * 11 10 9 21 21 H 0.96999 * 119.99984 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46931 * 59.99723 * 9 7 2 23 23 H 1.08995 * 109.47233 * 299.99485 * 9 7 2 24 24 H 1.09003 * 109.47112 * 60.00286 * 10 9 7 25 25 H 1.08996 * 109.47539 * 300.00252 * 10 9 7 26 26 H 1.09008 * 109.46456 * 294.17536 * 12 11 10 27 27 H 1.09003 * 109.46474 * 54.14041 * 12 11 10 28 28 H 1.08995 * 109.50534 * 179.12351 * 13 12 11 29 29 H 1.09011 * 109.49854 * 299.24031 * 13 12 11 30 30 H 0.96699 * 114.00570 * 60.28508 * 16 14 13 31 31 H 0.96698 * 114.00648 * 180.19843 * 19 17 14 32 32 H 1.09000 * 109.46271 * 305.85568 * 20 11 10 33 33 H 1.08998 * 109.46026 * 65.82128 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5109 -4.9343 0.0012 12 6 0.7661 -5.1113 1.2543 13 6 -0.0986 -6.3706 1.1619 14 6 0.8003 -7.5833 0.9048 15 1 0.1848 -8.4762 0.7950 16 8 1.6987 -7.7546 2.0027 17 6 1.6005 -7.3523 -0.3800 18 1 0.9163 -7.2616 -1.2236 19 8 2.4831 -8.4550 -0.5971 20 6 2.4159 -6.0646 -0.2429 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 1.4675 -5.2125 2.0825 27 1 0.1277 -4.2441 1.4231 28 1 -0.6393 -6.5103 2.0979 29 1 -0.8096 -6.2645 0.3424 30 1 1.2592 -7.9056 2.8507 31 1 3.0248 -8.3743 -1.3941 32 1 2.9759 -5.8897 -1.1615 33 1 3.1096 -6.1612 0.5923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709993344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:13 Heat of formation + Delta-G solvation = -105.913393 kcal Electronic energy + Delta-G solvation = -14959.078974 eV Core-core repulsion = 12405.310064 eV Total energy + Delta-G solvation = -2553.768910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.46119 -36.22893 -35.95794 -33.21068 -31.57985 -29.84988 -28.56190 -24.98832 -22.98193 -22.79926 -20.20932 -19.62490 -17.16687 -16.73009 -16.47465 -15.55865 -14.87807 -14.80960 -14.45111 -13.91992 -13.63258 -12.94835 -12.80204 -12.21278 -11.96859 -11.86747 -11.39528 -11.26009 -10.94961 -10.90205 -10.59458 -10.23218 -10.11433 -9.80524 -9.78915 -9.25121 -9.12925 -8.33194 -7.72576 -6.00188 -4.02615 3.33327 3.37564 3.40073 4.05646 4.23503 4.43482 4.61211 4.87260 5.02377 5.22107 5.34793 5.35730 5.46988 5.70527 5.80028 5.83477 5.98165 6.19921 6.21137 6.33574 6.46136 6.53127 6.95509 7.46231 7.50888 7.64680 7.72713 7.80766 7.89128 8.07138 8.42996 9.04320 9.61009 11.11184 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.059165 B = 0.006191 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.142554 B = 4521.481978 C = 4726.273692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.536 5.536 12 C 0.055 3.945 13 C -0.148 4.148 14 C 0.113 3.887 15 H 0.056 0.944 16 O -0.555 6.555 17 C 0.116 3.884 18 H 0.074 0.926 19 O -0.562 6.562 20 C 0.027 3.973 21 H 0.261 0.739 22 H 0.024 0.976 23 H 0.017 0.983 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.372 0.628 31 H 0.375 0.625 32 H 0.069 0.931 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -13.962 1.094 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.062 4.062 11 N -0.262 5.262 12 C -0.073 4.073 13 C -0.186 4.186 14 C 0.054 3.946 15 H 0.074 0.926 16 O -0.360 6.360 17 C 0.056 3.944 18 H 0.092 0.908 19 O -0.366 6.366 20 C -0.102 4.102 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.218 0.782 31 H 0.222 0.778 32 H 0.088 0.912 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.501 -13.959 0.787 13.990 hybrid contribution 0.836 1.131 0.541 1.506 sum 1.337 -12.828 1.327 12.966 Atomic orbital electron populations 1.69962 1.06023 1.26703 1.50621 1.24989 0.94838 0.99168 0.95270 0.86648 0.79574 0.83108 0.78610 1.20227 1.21253 1.20286 1.21165 0.92979 0.91088 1.50976 0.92844 1.19095 0.93951 0.90053 0.97757 1.22323 0.96753 0.88114 0.99028 1.62021 1.27503 1.02279 1.34375 1.22046 0.96906 0.97608 0.90705 1.22298 0.98453 0.95115 1.02746 1.21814 0.90078 0.96429 0.86294 0.92615 1.86598 1.36071 1.95015 1.18270 1.21830 0.91192 0.85599 0.95743 0.90825 1.86548 1.57281 1.43674 1.49099 1.22656 0.95107 0.91207 1.01193 0.92935 0.95724 0.96463 0.96135 0.92121 0.94777 0.89324 0.90906 0.89965 0.78201 0.77812 0.91210 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.75 4.91 -27.89 -0.14 0.62 16 10 C 0.06 1.39 4.90 -3.82 -0.02 1.37 16 11 N -0.54 -9.95 4.65 -234.67 -1.09 -11.04 16 12 C 0.06 0.95 5.16 -3.84 -0.02 0.93 16 13 C -0.15 -1.97 5.80 -26.65 -0.15 -2.12 16 14 C 0.11 1.50 3.50 -26.61 -0.09 1.40 16 15 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 16 O -0.55 -7.67 12.04 -46.48 -0.56 -8.23 16 17 C 0.12 1.62 3.41 -26.66 -0.09 1.52 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 19 O -0.56 -7.52 13.18 -46.48 -0.61 -8.14 16 20 C 0.03 0.44 4.95 -3.84 -0.02 0.42 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.02 0.47 6.44 -51.93 -0.33 0.14 16 24 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 26 H 0.03 0.60 7.76 -51.92 -0.40 0.20 16 27 H 0.09 1.68 6.22 -51.93 -0.32 1.36 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.37 3.47 9.09 45.56 0.41 3.88 16 31 H 0.38 3.38 9.08 45.56 0.41 3.79 16 32 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 33 H 0.04 0.77 7.76 -51.93 -0.40 0.37 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -32.75 268.43 -6.99 -39.74 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.54 Total: 2.59 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.94 Total: -9.50 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.36 Total: -37.20 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.17 Total: -16.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.75 -6.99 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709993344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.173 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds