Wall clock time and date at job start Mon Mar 30 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99939 * 2 1 4 4 H 1.48506 * 109.46870 * 269.99948 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99991 * 3 2 1 6 6 H 1.48500 * 109.47081 * 150.00219 * 3 2 1 7 7 C 1.37877 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47254 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.46852 * 110.99780 * 314.20619 * 11 10 9 13 13 C 1.53038 * 109.51991 * 174.16427 * 12 11 10 14 14 C 1.53121 * 109.28145 * 59.17795 * 13 12 11 15 15 H 1.09000 * 109.52188 * 62.25069 * 14 13 12 16 16 O 1.42890 * 109.52112 * 182.43704 * 14 13 12 17 17 C 1.53116 * 109.15919 * 302.34666 * 14 13 12 18 18 H 1.09002 * 109.50351 * 297.71191 * 17 14 13 19 19 O 1.42905 * 109.53279 * 177.61431 * 17 14 13 20 20 C 1.46851 * 110.99868 * 189.99760 * 11 10 9 21 21 H 0.96999 * 120.00383 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47215 * 59.99897 * 9 7 2 23 23 H 1.09006 * 109.46806 * 300.00573 * 9 7 2 24 24 H 1.08997 * 109.47326 * 60.00281 * 10 9 7 25 25 H 1.08999 * 109.46859 * 299.99680 * 10 9 7 26 26 H 1.08996 * 109.46331 * 294.17770 * 12 11 10 27 27 H 1.08998 * 109.46031 * 54.15532 * 12 11 10 28 28 H 1.09004 * 109.50259 * 179.12052 * 13 12 11 29 29 H 1.09005 * 109.50470 * 299.23445 * 13 12 11 30 30 H 0.96698 * 114.00520 * 299.68746 * 16 14 13 31 31 H 0.96699 * 113.99637 * 180.09920 * 19 17 14 32 32 H 1.08999 * 109.46045 * 65.82355 * 20 11 10 33 33 H 1.08998 * 109.45058 * 305.85067 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.4194 -4.9123 0.9813 13 6 -0.4108 -6.1914 0.8520 14 6 0.4909 -7.4058 1.0901 15 1 0.8892 -7.3705 2.1041 16 8 -0.2665 -8.6047 0.9147 17 6 1.6461 -7.3786 0.0854 18 1 1.2495 -7.4531 -0.9272 19 8 2.5235 -8.4783 0.3363 20 6 2.4168 -6.0652 0.2368 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6043 -0.8905 26 1 0.8367 -4.8503 1.9863 27 1 -0.2167 -4.0464 0.7981 28 1 -1.2114 -6.1820 1.5917 29 1 -0.8399 -6.2473 -0.1485 30 1 -1.0161 -8.6885 1.5198 31 1 3.2805 -8.5223 -0.2638 32 1 2.8246 -5.9977 1.2454 33 1 3.2312 -6.0364 -0.4870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709993346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:17 Heat of formation + Delta-G solvation = -105.333570 kcal Electronic energy + Delta-G solvation = -14864.209155 eV Core-core repulsion = 12310.465388 eV Total energy + Delta-G solvation = -2553.743767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.42717 -36.52836 -36.01517 -33.31365 -31.64841 -29.99247 -28.38338 -24.89150 -23.13104 -22.82171 -20.29364 -19.56273 -17.43086 -17.04390 -16.57278 -15.49518 -14.89033 -14.61749 -14.37821 -13.80294 -13.62382 -13.27888 -12.81580 -12.36749 -12.28895 -11.93570 -11.34932 -11.15284 -11.00030 -10.85350 -10.59641 -10.34429 -10.07517 -9.98249 -9.78435 -9.35850 -9.11955 -8.39339 -7.83835 -6.05277 -4.07855 3.29195 3.35500 3.38453 3.97487 4.19986 4.38713 4.54026 4.82863 5.10562 5.18181 5.31116 5.34116 5.43085 5.64151 5.76980 5.83509 5.91668 6.06010 6.20963 6.27704 6.43257 6.48136 6.83972 7.37517 7.46008 7.61118 7.65757 7.74375 7.78278 7.97830 8.36640 8.98480 9.56273 11.06126 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062998 B = 0.006068 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.349858 B = 4613.087082 C = 4967.967717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.020 3.980 10 C 0.063 3.937 11 N -0.537 5.537 12 C 0.049 3.951 13 C -0.147 4.147 14 C 0.113 3.887 15 H 0.055 0.945 16 O -0.561 6.561 17 C 0.116 3.884 18 H 0.070 0.930 19 O -0.562 6.562 20 C 0.026 3.974 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.022 0.978 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.374 0.626 31 H 0.376 0.624 32 H 0.037 0.963 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -12.740 1.924 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.079 4.079 13 C -0.185 4.185 14 C 0.054 3.946 15 H 0.073 0.927 16 O -0.366 6.366 17 C 0.057 3.943 18 H 0.088 0.912 19 O -0.367 6.367 20 C -0.103 4.103 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.220 0.780 31 H 0.222 0.778 32 H 0.055 0.945 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.891 -12.910 1.473 13.025 hybrid contribution 0.841 1.394 0.805 1.817 sum 1.733 -11.516 2.278 11.866 Atomic orbital electron populations 1.69956 1.06046 1.26710 1.50570 1.24989 0.94851 0.99251 0.95186 0.86572 0.79790 0.83348 0.78163 1.20580 1.21199 1.19917 1.21169 0.93031 0.90945 1.51035 0.92713 1.19261 0.94104 0.90481 0.97858 1.22343 0.97081 0.87731 0.99216 1.62042 1.11427 1.03535 1.49276 1.22205 0.94135 0.98210 0.93341 1.22333 0.98257 0.94315 1.03590 1.21839 0.90602 0.84287 0.97852 0.92657 1.86553 1.45759 1.41318 1.62969 1.21757 0.88823 0.85039 0.98678 0.91219 1.86548 1.40166 1.48966 1.60986 1.22737 0.95808 0.91310 1.00427 0.92921 0.95565 0.96100 0.96009 0.91717 0.95174 0.87989 0.90863 0.90041 0.77950 0.77776 0.94486 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.51 4.22 -27.88 -0.12 0.39 16 10 C 0.06 1.30 5.21 -3.82 -0.02 1.28 16 11 N -0.54 -9.63 4.81 -234.67 -1.13 -10.76 16 12 C 0.05 0.83 4.85 -3.83 -0.02 0.81 16 13 C -0.15 -2.04 5.72 -26.65 -0.15 -2.19 16 14 C 0.11 1.58 3.21 -26.61 -0.09 1.49 16 15 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 16 O -0.56 -7.56 13.26 -42.31 -0.56 -8.12 16 17 C 0.12 1.67 3.31 -26.65 -0.09 1.58 16 18 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 19 O -0.56 -7.65 13.26 -42.31 -0.56 -8.21 16 20 C 0.03 0.39 5.05 -3.83 -0.02 0.37 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 24 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 1.96 5.81 -51.93 -0.30 1.66 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.37 3.27 9.09 45.56 0.41 3.68 16 31 H 0.38 3.38 9.08 45.56 0.41 3.79 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -31.96 269.19 -6.95 -38.92 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.56 Total: 3.03 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.91 Total: -9.60 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.39 Total: -36.46 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.12 Total: -16.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.96 -6.95 -38.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709993346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.418 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds