Wall clock time and date at job start Mon Mar 30 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99939 * 2 1 4 4 H 1.48506 * 109.46870 * 269.99948 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99991 * 3 2 1 6 6 H 1.48500 * 109.47081 * 150.00219 * 3 2 1 7 7 C 1.37877 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47254 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.46987 * 180.02562 * 10 9 7 12 12 C 1.46852 * 110.99780 * 314.20619 * 11 10 9 13 13 C 1.53038 * 109.51991 * 174.16427 * 12 11 10 14 14 C 1.53121 * 109.28145 * 59.17795 * 13 12 11 15 15 H 1.09000 * 109.52188 * 62.25069 * 14 13 12 16 16 O 1.42890 * 109.52112 * 182.43704 * 14 13 12 17 17 C 1.53116 * 109.15919 * 302.34666 * 14 13 12 18 18 H 1.09002 * 109.50351 * 297.71191 * 17 14 13 19 19 O 1.42905 * 109.53279 * 177.61431 * 17 14 13 20 20 C 1.46851 * 110.99868 * 189.99760 * 11 10 9 21 21 H 0.96999 * 120.00383 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47215 * 59.99897 * 9 7 2 23 23 H 1.09006 * 109.46806 * 300.00573 * 9 7 2 24 24 H 1.08997 * 109.47326 * 60.00281 * 10 9 7 25 25 H 1.08999 * 109.46859 * 299.99680 * 10 9 7 26 26 H 1.08996 * 109.46331 * 294.17770 * 12 11 10 27 27 H 1.08998 * 109.46031 * 54.15532 * 12 11 10 28 28 H 1.09004 * 109.50259 * 179.12052 * 13 12 11 29 29 H 1.09005 * 109.50470 * 299.23445 * 13 12 11 30 30 H 0.96698 * 114.00520 * 299.68746 * 16 14 13 31 31 H 0.96699 * 113.99637 * 180.09920 * 19 17 14 32 32 H 1.08999 * 109.46045 * 65.82355 * 20 11 10 33 33 H 1.08998 * 109.45058 * 305.85067 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.4194 -4.9123 0.9813 13 6 -0.4108 -6.1914 0.8520 14 6 0.4909 -7.4058 1.0901 15 1 0.8892 -7.3705 2.1041 16 8 -0.2665 -8.6047 0.9147 17 6 1.6461 -7.3786 0.0854 18 1 1.2495 -7.4531 -0.9272 19 8 2.5235 -8.4783 0.3363 20 6 2.4168 -6.0652 0.2368 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5568 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6043 -0.8905 26 1 0.8367 -4.8503 1.9863 27 1 -0.2167 -4.0464 0.7981 28 1 -1.2114 -6.1820 1.5917 29 1 -0.8399 -6.2473 -0.1485 30 1 -1.0161 -8.6885 1.5198 31 1 3.2805 -8.5223 -0.2638 32 1 2.8246 -5.9977 1.2454 33 1 3.2312 -6.0364 -0.4870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709993346.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:17 Heat of formation + Delta-G solvation = -132.638022 kcal Electronic energy + Delta-G solvation = -14865.393165 eV Core-core repulsion = 12310.465388 eV Total energy + Delta-G solvation = -2554.927777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65103 -37.84574 -37.06493 -35.26973 -33.18716 -31.41727 -29.93131 -26.66481 -24.57620 -24.21575 -21.81972 -20.91474 -18.67223 -18.47747 -18.09911 -16.80694 -16.60596 -16.09841 -15.93898 -15.21505 -14.78785 -14.69529 -14.20139 -14.02784 -13.64650 -13.43161 -12.96184 -12.82704 -12.57128 -12.41656 -12.16416 -11.94542 -11.55495 -11.45433 -11.17285 -10.93613 -10.85677 -10.54054 -9.29238 -8.21244 -6.32212 1.40784 1.41786 1.52673 2.39501 2.79854 3.12629 3.18741 3.30727 3.68556 3.93719 4.05337 4.15032 4.23168 4.40266 4.45736 4.62919 4.66091 4.70101 4.82663 4.92701 4.98052 5.03897 5.22013 5.43505 5.63157 5.75910 6.01992 6.16867 6.28662 6.80744 6.84109 6.87220 7.36964 8.90668 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062998 B = 0.006068 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.349858 B = 4613.087082 C = 4967.967717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.078 3.922 11 N -0.545 5.545 12 C 0.049 3.951 13 C -0.135 4.135 14 C 0.116 3.884 15 H 0.058 0.942 16 O -0.572 6.572 17 C 0.121 3.879 18 H 0.064 0.936 19 O -0.571 6.571 20 C 0.030 3.970 21 H 0.264 0.736 22 H -0.005 1.005 23 H 0.004 0.996 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.037 0.963 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -13.312 2.203 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.049 4.049 11 N -0.271 5.271 12 C -0.079 4.079 13 C -0.173 4.173 14 C 0.057 3.943 15 H 0.076 0.924 16 O -0.380 6.380 17 C 0.061 3.939 18 H 0.082 0.918 19 O -0.378 6.378 20 C -0.098 4.098 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.022 0.978 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.244 0.756 31 H 0.245 0.755 32 H 0.055 0.945 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.851 -13.509 1.753 13.748 hybrid contribution 0.518 1.504 0.719 1.746 sum 2.370 -12.005 2.472 12.484 Atomic orbital electron populations 1.70087 1.07747 1.27823 1.51392 1.25926 0.95743 1.03234 0.94602 0.85444 0.78635 0.78445 0.78496 1.19789 1.20749 1.18806 1.21619 0.93554 0.92270 1.50973 0.92206 1.19085 0.94321 0.91961 0.95507 1.22008 0.95846 0.87724 0.99350 1.61983 1.11958 1.03133 1.50013 1.22147 0.93838 0.98825 0.93049 1.22244 0.98368 0.92705 1.03992 1.21745 0.90526 0.84259 0.97803 0.92409 1.86511 1.46774 1.40746 1.64008 1.21626 0.89059 0.84684 0.98498 0.91834 1.86515 1.41037 1.48337 1.61916 1.22779 0.95746 0.90431 1.00872 0.92719 0.98653 0.97779 0.95916 0.91414 0.95145 0.91050 0.88359 0.90828 0.75600 0.75528 0.94503 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.49 4.22 29.85 0.13 1.61 16 10 C 0.08 3.24 5.21 86.30 0.45 3.69 16 11 N -0.54 -19.35 4.81 -896.35 -4.31 -23.66 16 12 C 0.05 1.68 4.85 86.32 0.42 2.10 16 13 C -0.14 -3.58 5.72 30.65 0.18 -3.41 16 14 C 0.12 3.00 3.21 30.67 0.10 3.10 16 15 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 16 O -0.57 -14.04 13.26 -142.22 -1.89 -15.93 16 17 C 0.12 3.23 3.31 30.64 0.10 3.33 16 18 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 19 O -0.57 -14.12 13.26 -142.22 -1.89 -16.01 16 20 C 0.03 0.86 5.05 86.32 0.44 1.29 16 21 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 22 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.00 0.22 6.21 -2.38 -0.01 0.21 16 24 H 0.02 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 2.86 5.81 -2.39 -0.01 2.85 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.39 5.84 9.09 -74.06 -0.67 5.17 16 31 H 0.39 6.07 9.08 -74.06 -0.67 5.40 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -67.87 269.19 -3.51 -71.37 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.24 Total: 12.30 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 2.50 Total: -18.16 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -4.02 Total: -79.37 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -3.77 Total: -31.94 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.87 -3.51 -71.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709993346.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.265 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds