Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47328 * 270.00388 * 3 2 1 5 5 H 1.48503 * 109.47335 * 30.00827 * 3 2 1 6 6 H 1.48504 * 109.47105 * 150.00346 * 3 2 1 7 7 C 1.37881 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46930 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00460 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.52210 * 35.11517 * 12 11 10 14 14 C 1.53092 * 109.51761 * 274.99512 * 12 11 10 15 15 O 1.42905 * 109.41215 * 182.48192 * 14 12 11 16 16 C 1.42905 * 114.09831 * 61.16158 * 15 14 12 17 17 C 1.53098 * 109.41155 * 298.83847 * 16 15 14 18 18 C 1.53175 * 109.52519 * 155.31060 * 12 11 10 19 19 H 1.09005 * 109.54265 * 296.75019 * 18 12 11 20 20 O 1.42899 * 109.54246 * 56.92775 * 18 12 11 21 21 H 0.97000 * 119.99531 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46556 * 60.00594 * 9 7 2 23 23 H 1.09003 * 109.47108 * 300.00532 * 9 7 2 24 24 H 1.08993 * 109.47477 * 60.00085 * 10 9 7 25 25 H 1.09003 * 109.47374 * 300.00019 * 10 9 7 26 26 H 1.00900 * 111.00378 * 56.03929 * 11 10 9 27 27 H 1.08997 * 109.48111 * 62.50333 * 14 12 11 28 28 H 1.08999 * 109.49220 * 302.47244 * 14 12 11 29 29 H 1.09000 * 109.47932 * 58.81878 * 16 15 14 30 30 H 1.08993 * 109.48024 * 178.86013 * 16 15 14 31 31 H 1.08996 * 109.52270 * 297.70307 * 17 16 15 32 32 H 1.08995 * 109.57012 * 177.54155 * 17 16 15 33 33 H 0.96704 * 113.99290 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0006 13 1 3.3169 -5.8303 0.5910 14 6 2.8555 -6.3943 -1.4377 15 8 3.7087 -7.5408 -1.4401 16 6 3.0941 -8.7265 -0.9317 17 6 2.6831 -8.5018 0.5259 18 6 1.7372 -7.2993 0.6019 19 1 1.4849 -7.0991 1.6433 20 8 0.5445 -7.5797 -0.1336 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6245 -2.5571 0.8897 24 1 2.8717 -3.6045 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 0.8743 -4.9842 -0.7827 27 1 3.3905 -5.5423 -1.8571 28 1 1.9697 -6.5992 -2.0390 29 1 2.2112 -8.9619 -1.5261 30 1 3.8008 -9.5544 -0.9865 31 1 3.5701 -8.3062 1.1284 32 1 2.1749 -9.3893 0.9029 33 1 0.0512 -8.3443 0.1939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710911385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = -133.963116 kcal Electronic energy + Delta-G solvation = -14763.733341 eV Core-core repulsion = 12208.748104 eV Total energy + Delta-G solvation = -2554.985237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.82944 -37.46037 -37.04951 -35.03712 -32.64994 -32.05987 -29.24044 -26.10297 -25.76926 -23.73556 -22.50051 -21.11672 -18.54423 -17.99464 -17.45037 -17.22170 -16.56493 -16.21591 -15.87099 -15.66282 -15.01272 -14.72452 -14.31425 -13.94860 -13.47413 -13.25330 -12.88151 -12.80176 -12.66937 -12.40711 -12.17566 -11.99969 -11.67340 -11.38327 -11.24543 -11.00357 -10.58854 -10.46261 -9.22134 -8.20707 -6.32619 1.40532 1.42291 1.53493 2.40288 2.79825 3.12764 3.31575 3.37323 3.74283 3.87267 4.00002 4.08512 4.22001 4.42519 4.50418 4.56454 4.67576 4.72628 4.82173 4.90007 5.04547 5.07785 5.18669 5.42922 5.65108 5.75819 6.02282 6.17883 6.29236 6.47077 6.84516 6.96830 7.36858 8.91626 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061280 B = 0.005636 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.812740 B = 4966.483009 C = 5210.194484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.032 3.968 10 C 0.081 3.919 11 N -0.678 5.678 12 C 0.059 3.941 13 H 0.088 0.912 14 C 0.044 3.956 15 O -0.400 6.400 16 C 0.056 3.944 17 C -0.179 4.179 18 C 0.117 3.883 19 H 0.061 0.939 20 O -0.573 6.573 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.006 1.006 24 H 0.060 0.940 25 H 0.020 0.980 26 H 0.341 0.659 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 -18.119 0.231 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.047 4.047 11 N -0.309 5.309 12 C -0.051 4.051 13 H 0.107 0.893 14 C -0.034 4.034 15 O -0.318 6.318 16 C -0.020 4.020 17 C -0.217 4.217 18 C 0.057 3.943 19 H 0.079 0.921 20 O -0.381 6.381 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.013 0.987 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.159 0.841 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.291 -17.507 0.514 18.297 hybrid contribution -0.066 0.649 -0.498 0.820 sum 5.225 -16.859 0.017 17.650 Atomic orbital electron populations 1.70115 1.07886 1.27845 1.51373 1.25991 0.95764 1.03433 0.94538 0.85398 0.78620 0.78189 0.78521 1.19713 1.20651 1.18685 1.21614 0.93561 0.92207 1.51040 0.92074 1.18911 0.94279 0.92307 0.95030 1.21874 0.95660 0.88368 0.98833 1.60534 1.19096 1.01076 1.50212 1.22299 0.95131 0.91065 0.96638 0.89346 1.23184 0.94617 0.88623 0.96991 1.87881 1.40351 1.18852 1.84728 1.22746 0.98857 0.87011 0.93421 1.22883 1.01006 0.99445 0.98344 1.21783 0.84957 0.92668 0.94895 0.92054 1.86506 1.37917 1.54233 1.59459 0.92707 0.99164 0.98739 0.92187 0.96155 0.84064 0.90134 0.92773 0.92544 0.86926 0.89973 0.87451 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.77 5.23 29.85 0.16 1.92 16 10 C 0.08 3.53 5.42 86.30 0.47 4.00 16 11 N -0.68 -25.23 6.07 -491.13 -2.98 -28.21 16 12 C 0.06 1.77 2.45 45.01 0.11 1.88 16 13 H 0.09 2.68 7.80 -2.39 -0.02 2.66 16 14 C 0.04 1.29 5.95 72.01 0.43 1.72 16 15 O -0.40 -10.82 10.77 -148.98 -1.60 -12.42 16 16 C 0.06 1.06 6.70 72.01 0.48 1.54 16 17 C -0.18 -2.99 5.84 30.69 0.18 -2.81 16 18 C 0.12 2.73 3.48 30.71 0.11 2.83 16 19 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 20 O -0.57 -13.23 12.07 -148.98 -1.80 -15.03 16 21 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.06 2.57 8.06 -2.39 -0.02 2.55 16 25 H 0.02 0.86 7.49 -2.39 -0.02 0.84 16 26 H 0.34 13.00 8.42 -89.69 -0.75 12.24 16 27 H 0.08 2.47 7.52 -2.39 -0.02 2.45 16 28 H 0.05 1.61 7.77 -2.39 -0.02 1.59 16 29 H 0.06 1.06 7.82 -2.39 -0.02 1.05 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.39 5.24 9.09 -74.05 -0.67 4.56 16 Total: -1.00 -68.38 271.57 -1.77 -70.15 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.33 Total: 16.17 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 2.63 Total: -19.94 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.70 Total: -85.75 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -3.40 Total: -27.45 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.38 -1.77 -70.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710911385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.810 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds