Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48495 * 109.47393 * 269.99835 * 3 2 1 5 5 H 1.48499 * 109.46877 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.47241 * 149.99757 * 3 2 1 7 7 C 1.37882 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99589 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47052 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00027 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.52259 * 324.87392 * 12 11 10 14 14 C 1.53093 * 109.52234 * 84.99817 * 12 11 10 15 15 O 1.42904 * 109.42351 * 177.50843 * 14 12 11 16 16 C 1.42902 * 114.09961 * 298.86177 * 15 14 12 17 17 C 1.53094 * 109.42545 * 61.14161 * 16 15 14 18 18 C 1.53176 * 109.52365 * 204.68469 * 12 11 10 19 19 H 1.09002 * 109.54544 * 302.98189 * 18 12 11 20 20 O 1.42902 * 109.54230 * 63.24551 * 18 12 11 21 21 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47107 * 59.99813 * 9 7 2 23 23 H 1.09007 * 109.46873 * 300.00040 * 9 7 2 24 24 H 1.09005 * 109.46837 * 59.99981 * 10 9 7 25 25 H 1.08997 * 109.46961 * 300.00220 * 10 9 7 26 26 H 1.00906 * 110.99985 * 303.95006 * 11 10 9 27 27 H 1.09002 * 109.48198 * 297.49951 * 14 12 11 28 28 H 1.08999 * 109.48029 * 57.52565 * 14 12 11 29 29 H 1.09000 * 109.47314 * 301.15801 * 16 15 14 30 30 H 1.09001 * 109.49082 * 181.13246 * 16 15 14 31 31 H 1.08997 * 109.52488 * 182.49772 * 17 16 15 32 32 H 1.08995 * 109.52127 * 62.29758 * 17 16 15 33 33 H 0.96698 * 113.99849 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5107 -4.9343 -0.0020 12 6 2.4352 -6.0759 -0.0011 13 1 3.3179 -5.8303 -0.5915 14 6 2.8537 -6.3942 1.4367 15 8 3.7067 -7.5407 1.4405 16 6 3.0930 -8.7264 0.9310 17 6 2.6841 -8.5018 -0.5271 18 6 1.7384 -7.2993 -0.6045 19 1 0.8286 -7.5142 -0.0439 20 8 1.4095 -7.0369 -1.9702 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6239 -2.5574 0.8881 24 1 2.8712 -3.6048 0.8891 25 1 2.8725 -3.6040 -0.8909 26 1 0.8739 -4.9845 0.7792 27 1 3.3880 -5.5421 1.8569 28 1 1.9669 -6.5990 2.0365 29 1 2.2094 -8.9618 1.5241 30 1 3.7996 -9.5545 0.9869 31 1 2.1761 -9.3895 -0.9039 32 1 3.5720 -8.3062 -1.1284 33 1 0.9651 -7.7711 -2.4158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710911393.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -106.979811 kcal Electronic energy + Delta-G solvation = -14692.070153 eV Core-core repulsion = 12138.254999 eV Total energy + Delta-G solvation = -2553.815153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73652 -36.55489 -35.62904 -32.99759 -31.72189 -30.46044 -27.64670 -24.52541 -24.21526 -22.55204 -20.83126 -20.04903 -17.37514 -16.46879 -16.31823 -15.96193 -15.27098 -14.68778 -14.45368 -14.11213 -13.80991 -13.06910 -12.91325 -12.74049 -12.10798 -12.01734 -11.50694 -11.13353 -10.99688 -10.90864 -10.71422 -10.42382 -10.09728 -9.88254 -9.74912 -9.32231 -9.11296 -8.32791 -7.75834 -5.97193 -3.99659 3.34572 3.40344 3.43664 3.70430 4.20587 4.41856 4.54507 4.69965 4.80425 4.98464 5.10565 5.15346 5.37443 5.38864 5.46036 5.57236 5.61519 5.80581 5.90963 6.15385 6.36929 6.40855 6.99399 7.00276 7.48083 7.73378 7.76871 7.86372 7.96875 8.10905 8.45999 9.07588 9.63986 11.14322 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054141 B = 0.005717 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.046665 B = 4896.102429 C = 5168.113054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.670 5.670 12 C 0.061 3.939 13 H 0.089 0.911 14 C 0.035 3.965 15 O -0.382 6.382 16 C 0.062 3.938 17 C -0.190 4.190 18 C 0.117 3.883 19 H 0.053 0.947 20 O -0.543 6.543 21 H 0.260 0.740 22 H 0.026 0.974 23 H 0.013 0.987 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.334 0.666 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -17.521 1.301 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.301 5.301 12 C -0.051 4.051 13 H 0.107 0.893 14 C -0.044 4.044 15 O -0.299 6.299 16 C -0.015 4.015 17 C -0.229 4.229 18 C 0.057 3.943 19 H 0.071 0.929 20 O -0.347 6.347 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.152 0.848 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.879 -16.811 0.832 17.273 hybrid contribution 0.195 0.375 0.686 0.806 sum 4.074 -16.436 1.518 17.002 Atomic orbital electron populations 1.69974 1.06046 1.26566 1.50710 1.25000 0.94835 0.99211 0.95299 0.86582 0.79780 0.83426 0.78130 1.20617 1.21239 1.19923 1.21179 0.92997 0.91005 1.50828 0.92741 1.19069 0.94015 0.90375 0.97749 1.22225 0.97014 0.88245 0.98682 1.60596 1.18756 1.01558 1.49192 1.22200 0.96430 0.91599 0.94836 0.89259 1.23506 0.94959 0.88897 0.97022 1.87937 1.39905 1.18032 1.84024 1.22525 0.98207 0.88075 0.92648 1.23027 1.01800 0.99416 0.98649 1.21779 0.95544 0.93067 0.83929 0.92947 1.86727 1.80944 1.43307 1.23673 0.93008 0.95539 0.96850 0.96633 0.92149 0.84846 0.88114 0.92921 0.93155 0.88761 0.90689 0.90160 0.78740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.44 5.42 -3.83 -0.02 1.42 16 11 N -0.67 -12.40 6.18 -106.58 -0.66 -13.06 16 12 C 0.06 0.94 2.34 -67.57 -0.16 0.78 16 13 H 0.09 1.53 7.80 -51.93 -0.41 1.13 16 14 C 0.03 0.47 6.10 37.21 0.23 0.70 16 15 O -0.38 -5.11 10.77 -35.23 -0.38 -5.48 16 16 C 0.06 0.62 6.84 37.21 0.25 0.88 16 17 C -0.19 -1.92 5.77 -26.59 -0.15 -2.07 16 18 C 0.12 1.51 3.20 -26.55 -0.08 1.43 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 O -0.54 -7.80 13.25 -35.23 -0.47 -8.26 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.32 7.49 -51.93 -0.39 -0.07 16 25 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 26 H 0.33 5.80 8.45 -39.29 -0.33 5.47 16 27 H 0.10 1.43 7.52 -51.93 -0.39 1.04 16 28 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.37 3.39 9.09 45.56 0.41 3.81 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -32.73 273.36 -6.60 -39.33 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.44 Total: 3.13 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.49 Total: -10.15 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.08 Total: -39.66 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.85 Total: -13.75 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.73 -6.60 -39.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710911393.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.649 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds